RosettaCommons - Solved

READ ME FIRST

rmoretti — Fri, 04 Sep 2015 22:26:09 +0000

This is a forum dedicated to Rosetta++.

Development of Rosetta++ (aka Rosetta2) ceased around 2010.

The current version of Rosetta is Rosetta3. -- Please see the Rosetta3 forums for help on using Rosetta3.

Access and support to Rosetta++ is provided primarily for recapitulation of previous results. It is highly recommended that all new projects use Rosetta3 rather than Rosetta++.

We will attempt to help you as much as possible with Rosetta++, but please be advised that Rosetta++ is no longer in frequent use.

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Rosetta++ - Applications

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READ ME FIRST

rmoretti — Fri, 04 Sep 2015 22:24:56 +0000

This is a forum dedicated to Rosetta++.

Development of Rosetta++ (aka Rosetta2) ceased around 2010.

The current version of Rosetta is Rosetta3. -- Please see the Rosetta3 forums for help on using Rosetta3.

Access and support to Rosetta++ is provided primarily for recapitulation of previous results. It is highly recommended that all new projects use Rosetta3 rather than Rosetta++.

We will attempt to help you as much as possible with Rosetta++, but please be advised that Rosetta++ is no longer in frequent use.

Category:

Compilation

Forums:

Rosetta++ - Build/Install

Post Situation:

Solved

READ ME FIRST

rmoretti — Fri, 04 Sep 2015 22:23:32 +0000

This is a forum dedicated to Rosetta++.

Development of Rosetta++ (aka Rosetta2) ceased around 2010.

The current version of Rosetta is Rosetta3 . -- Please see the Rosetta3 forums for help on using Rosetta3.

Access and support to Rosetta++ is provided primarily for recapitulation of previous results. It is highly recommended that all new projects use Rosetta3 rather than Rosetta++.

We will attempt to help you as much as possible with Rosetta++, but please be advised that Rosetta++ is no longer in frequent use.

Category:

Compilation

Forums:

Rosetta++ - General

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ROSIE FAQ

Sergey — Mon, 08 Apr 2013 17:41:21 +0000

Q: I would like to use on ROSIE server but our data is highly sensitive. I saw the job privacy setting that allow me to keep job data not visible to others but could you guarantee that it will not be accessed by third parties, shared, or accidentally became public?

A: No, we can not provide such guarantee. When submitting a ROSIE job please take in to account that there is always a possibility that your data might be used for debug purposes, or get accidentally exposed due to a software bug. if you selected 'keep my job data private' checkbox during submission we would make sure to not share your data intentionally but this still could happend due to bugs or circumstance thats not under our control. We work hard to prevent such accidental exposure but no software is perfect. So if you are dealing with confidential data please consider acquiring Rosetta source code to run locally instead.

=== ANTIBODY App ===
Q: Out of 10 best model structure of variable region which could be the best one and on what basis could we select that one?

A: We do not know which is best! They are ranked by energy, but this is an imperfect measure. It would be best if you could visually inspect them and use your knowledge of your antibody to choose the best model or models for use. Please note that you can dock all ten models simultaneously with our EnsembleDock methods.

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ROSIE - General

FAQ

admin — Mon, 30 Aug 2010 11:21:00 +0000

Where is the main website for PyRosetta?

http://www.pyrosetta.org/

Who is behind PyRosetta?

PyRosetta was created by the laboratory of Jeff Gray at Johns Hopkins University and is based on Rosetta, a software package built and maintained by consortium of academic researchers from around the world.

Where can I get PyRosetta?

https://www.rosettacommons.org/software/license-and-download
Licenses are free for users at academic and nonprofit research institutions.

If I have a Rosetta license, do I need a separate PyRosetta license?

Yes, Rosetta and PyRosetta are licensed separately.

Where is the PyRosetta documentation?

http://www.pyrosetta.org/documentation

Are there additional PyRosetta FAQs?

http://www.pyrosetta.org/faq

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PyRosetta - Scripts

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FAQ

admin — Mon, 30 Aug 2010 11:20:11 +0000

Where is the main website for PyRosetta?

http://www.pyrosetta.org/

Who is behind PyRosetta?

Where can I get PyRosetta?

https://www.rosettacommons.org/software/license-and-download
Licenses are free for users at academic and nonprofit research institutions.

If I have a Rosetta license, do I need a separate PyRosetta license?

Yes, Rosetta and PyRosetta are licensed separately.

Where is the PyRosetta documentation?

http://www.pyrosetta.org/documentation

Are there additional PyRosetta FAQs?

http://www.pyrosetta.org/faq

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Compilation

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PyRosetta - Applications

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FAQ

admin — Mon, 30 Aug 2010 11:19:13 +0000

Where is the main website for PyRosetta?

http://www.pyrosetta.org/

Who is behind PyRosetta?

Where can I get PyRosetta?

https://www.rosettacommons.org/software/license-and-download
Licenses are free for users at academic and nonprofit research institutions.

If I have a Rosetta license, do I need a separate PyRosetta license?

Yes, Rosetta and PyRosetta are licensed separately.

Where is the PyRosetta documentation?

http://www.pyrosetta.org/documentation

Are there additional PyRosetta FAQs?

http://www.pyrosetta.org/faq

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Compilation

Forums:

PyRosetta - Build/Install

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FAQ

admin — Mon, 30 Aug 2010 11:18:11 +0000

Where is the main website for Rosetta?

https://www.rosettacommons.org/

Who is behind Rosetta?

Rosetta was created and is developed by a consortium of academic researchers. Please see https://www.rosettacommons.org/about for more information about the scientists behind Rosetta.

What versions of Rosetta are available?

The "core" version of Rosetta is Rosetta3, which provides a command line interface for Unix-like systems (Mac and Linux).
PyRosetta is a Python language wrapper around core Rosetta3 functionality. (PyRosetta forums)
ROSIE is a web-accessible server for select protocols. (ROSIE forum) Other servers such as Robetta, RosettaDesign and FlexPepDock exist. See https://www.rosettacommons.org/software/servers for more details.
Rosetta++, aka Rosetta2, is an older version of Rosetta. (Rosetta++ forums) It is no longer actively developed, and is provided primarily for recapitulation of previous results.

... then what are RosettaAbinito, RosettaDesign, RosettaLigand, RosettaScripts, ... ?

Certain protocols in Rosetta have their own name. Most all of these protocols are included with the standard download of Rosetta3. (... and PyRosetta and ROSIE and the other servers.)

Where can I get Rosetta?

https://www.rosettacommons.org/software/license-and-download
Licenses are free for users at academic and nonprofit research institutions.

Where is the Rosetta3 documentation?

https://www.rosettacommons.org/docs/latest/Home

Are there demos of the protocols available?

Demos of select protocols should be available in the demos/ directory in the standard Rosetta3 download.
An overview of these is at https://www.rosettacommons.org/demos/latest/Home

I have questions about modifying Rosetta code to do something new. Can I ask questions about that here?

Yes, please do. More detailed information about the code structure and usage is available with the developers' resources at https://www.rosettacommons.org/dev You may also want to look into PyRosetta, which provides Python language access to core Rosetta functionality, for easier protocol development.

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Rosetta 3 - Applications

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FAQ

admin — Mon, 30 Aug 2010 11:17:21 +0000

Where is the main website for Rosetta?

https://www.rosettacommons.org/

Who is behind Rosetta?

Rosetta was created and is developed by a consortium of academic researchers. Please see https://www.rosettacommons.org/about for more information about the scientists behind Rosetta.

What versions of Rosetta are available?

The "core" version of Rosetta is Rosetta3, which provides a command line interface for Unix-like systems (Mac and Linux).
PyRosetta is a Python language wrapper around core Rosetta3 functionality. (PyRosetta forums)
ROSIE is a web-accessible server for select protocols. (ROSIE forum) Other servers such as Robetta, RosettaDesign and FlexPepDock exist. See https://www.rosettacommons.org/software/servers for more details.
Rosetta++, aka Rosetta2, is an older version of Rosetta. (Rosetta++ forums) It is no longer actively developed, and is provided primarily for recapitulation of previous results.

... then what are RosettaAbinito, RosettaDesign, RosettaLigand, RosettaScripts, ... ?

Certain protocols in Rosetta have their own name. Most all of these protocols are included with the standard download of Rosetta3. (... and PyRosetta and ROSIE and the other servers.)

Where can I get Rosetta?

https://www.rosettacommons.org/software/license-and-download
Licenses are free for users at academic and nonprofit research institutions.

Where is the Rosetta3 documentation?

https://www.rosettacommons.org/docs/latest/Home

Is there documentation on how to compile and install Rosetta?

https://www.rosettacommons.org/docs/latest/build_documentation/Build-Documentation

Are there demos of the protocols available?

Demos of select protocols should be available in the demos/ directory in the standard Rosetta3 download.
An overview of these is at https://www.rosettacommons.org/demos/latest/Home

I have questions about modifying Rosetta code to do something new. Can I ask questions about that here?

Category:

Compilation

Forums:

Rosetta 3 - Build/Install

Post Situation:

Solved

FAQ

admin — Mon, 30 Aug 2010 11:16:00 +0000

Where is the main website for Rosetta?

https://www.rosettacommons.org/

Who is behind Rosetta?

Rosetta was created and is developed by a consortium of academic researchers. Please see https://www.rosettacommons.org/about for more information about the scientists behind Rosetta.

What versions of Rosetta are available?

The "core" version of Rosetta is Rosetta3, which provides a command line interface for Unix-like systems (Mac and Linux).
PyRosetta is a Python language wrapper around core Rosetta3 functionality. (PyRosetta forums)
ROSIE is a web-accessible server for select protocols. (ROSIE forum) Other servers such as Robetta, RosettaDesign and FlexPepDock exist. See https://www.rosettacommons.org/software/servers for more details.
Rosetta++, aka Rosetta2, is an older version of Rosetta. (Rosetta++ forums) It is no longer actively developed, and is provided primarily for recapitulation of previous results.

... then what are RosettaAbinito, RosettaDesign, RosettaLigand, RosettaScripts, ... ?

Certain protocols in Rosetta have their own name. Most all of these protocols are included with the standard download of Rosetta3. (... and PyRosetta and ROSIE and the other servers.)

Where can I get Rosetta?

https://www.rosettacommons.org/software/license-and-download
Licenses are free for users at academic and nonprofit research institutions.

Where is the Rosetta3 documentation?

https://www.rosettacommons.org/docs/latest/Home

Are there demos of the protocols available?

Demos of select protocols should be available in the demos/ directory in the standard Rosetta3 download.
An overview of these is at https://www.rosettacommons.org/demos/latest/Home

I have questions about modifying Rosetta code to do something new. Can I ask questions about that here?

Category:

Compilation

Forums:

Rosetta 3 - General

Post Situation:

Solved