I am in the stage of trying to install and build rosetta and I have reached the point where I am using scons.py.
I have been following the guide (https://www.rosettacommons.org/demos/latest/tutorials/install_build/install_build) so far, but I reach a road block when I build with scons.py. my commands and the results are as follows:
Hi,
I'm trying to install Rosetta 2019.22 in my Home directory of a cluster (which I have done successfully on a different cluster in the past).
However, I'm getting an error:
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Hello,
I've installed Rosetta 3.11 for Linux ubuntu 16.04 without any failure.
However, I encountered some missing binaries after running unit tests. This is the general command I use for the unit test.
python scons.py -j #numproc mode=debug cat=test
The snippet below is the output returned from the unit test.
I'm trying to build rosetta with mpi and found that because of file `src/utility/crash_report.cc` line 178 lacks semicolon at the end of the line it fails to build.
This happens with version 3.11 and 2019.40 (latest).
And I want to ask that is it able to build rosetta with cmake?
I'm currently trying to build by cmake at directory `cmake/build_sharedmpi` with ninja and intel compiler but it fails to build.
Is there any suitable compiler for the build?(maybe gcc?)
I am having an interesting time trying to compile/install the source. I obtained an academic license, and downloaded the latest stable release, but it refuses to compile.
Specs/Details/Code:
Ubuntu 18.04.1
Rosetta 2019.35/31 ( I have tried both )
From terminal I run:
~$: cd my/rosetta/dir/main/source
Dear Friends,
I have successfully built "mpi" binaries on my ubuntu 18.04. I want to run rosetta on my centos6.9 (with "Openmpi") machine too; can I simply copy the binaries from my ubuntu to centos and run rosetta using "mpi" there? thank you!
Dear Friends,
I am trying to install rosetta on centos 6.9 as a non-root user. Python version is 2.7. OPenmpi is installed too. But, when I run this below command I get this error: (it's the end section of the error)
Dear Friends,
I compiled rosetta using :
./scons.py -j <number_of_cores_to_use> mode=release bin
But, since I have 20 cores, and I want to distribute the runs across all cores, I want to use "MPI" options. Could you please let me know how can I uninstall and install rosetta using "MPI" option? thanks@!
Hi,
I am just learning how to use rosetta_scripts and I do not know how to find some descriptions on example xml and its contents in rosetta suit. I am wondering whether anyone can help out. I would much appreciated.
I want to find some help information on the alanine_scan.xml.
Hi,
I have rosetta installed but when using it I accidently deleted rosetta_scripts.default.linuxgccrelease. I am wondering how I can get it back. Can anyone help me, please?
Thank you very much.
Jinyan