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Rosetta Install, I Am Perplexed

Category: 
Compilation

I am having an interesting time trying to compile/install the source. I obtained an academic license, and downloaded the latest stable release, but it refuses to compile.

 

Specs/Details/Code:

Ubuntu 18.04.1

Rosetta 2019.35/31 ( I have tried both )

From terminal I run:

~$: cd my/rosetta/dir/main/source

Post Situation: 

Fragment Insertion to Generate a Loop

Category: 
Loop Modeling

Hello master builders/users,

I have a problem that I am encountering in my script that I (desperately) need some assistance with.   I am trying to generate Loops for a protein 4115 via fragment insertion method. I have attached my script for reference.

Here is what  am tryiing to acheive: 

Post Situation: 

how to download "GUIs/pyrosetta_toolkit/documentation" ?

Category: 
PyRosetta

Hello,

      I need GUIs/pyrosetta_toolkit/ documentation from http://www.pyrosetta.org/documentation#TOC-1.-The-PyRosetta-Toolkit. However the linkage to this documentation is forbidden now. Can someone do me a favour to provide this documentation by email ? My email address is liuhui@qibebt.ac.cn

      Thank you very much!

best wishes

Hui Liu

Post Situation: 

how to perform model quality assessment of rosetta generated models?

Category: 
Structure prediction

Dear Friends,

I am performing de novo structure prediciton fo a 382 long protein sequence. I am using Rosetta for de novo structure prediction.

Can you please let me know, what is the best method to perfornm protein model quality assessment? I have been looking at some, like MetaMQAP,QA-RecobineIt, but these servers dont work.

Also, once I get my models from programs like DMPfold, I-Tasser, and Rosetta, what should be the next approach to choose the best model among the set of models? Thanks!

Post Situation: 

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