Unsolved

Hi guys

Our local cluster has recently ,finallly, helped me to get the mpi Rosetta version installed.
RosettaDock seems to be working though I get some error messages. None of which i observe on my local computer.
1st:
Created 6242 residue types
Number of residue types is greater than MAX_RESIDUE_TYPES. Rerun with -override_rsd_type_limit. Or if you have introduced a bunch of patches, consider declaring only the ones you want to use at the top of your app (with the options) with the command option[ chemical::include_patches ].push_back( ... ).

Hello:

I am trying to relax my protein with following parameters, but it failed with messages:

-database /home/albert/install/rosetta_2014/main/database
-nstruct $nstruct
-in:file:s $pwd/input.pdb
-relax:quick
-out:path:pdb .
-out:suffix $i
-out:file:fullatom
-out:pdb

core.pack.task: Packer task: initialize from command line()
protocols.jd2.JobDistributor:

Hello,
I am doing a research internship, on modelling some antibodies recognizing a short peptide from a conserved part of the gp41 protein of the HIV1 virus and simulating their docking.

Hi

I am trying to design and sample a loop using Remodel. Residues that are interacting but farther away than 6 A are not being repacked (using the -find_neighbors) and I would like to increase the cutoff. How can I change this parameter?

thanks in advance

felipet