The problem hasn't been solved
Hi all!
I am trying to generate a file with all the parameters for the monomer of a rigid polymer.
Is there any special way? Because the param file that I obtain is different from, for example, aminoacids.
Thank you in advance.
Hi
what are the dependencies of mol2genparams.py scripts? when I am trying to run the scripts, its saying no module name Type or BasicClasses and so on.
I already have numba, scipy and numpy installed.
Thank you
Dhiraj
Hi Rosetta Team!
I am trying to use RosettaScripts to design side-chain conformations to a protein backbone.
Unfortunately, the output score.sc only shows total_score and with all zeros.
Hi,
I'm trying to do CM hybridize. However, there is a segmentation fault when I start to run:
https://graylab.jhu.edu/PyRosetta.documentation gives me 403 forbidden. Is this an sever pemission error that will be resolved shortly or is the online documentation no longer intended to be publically accessible?
Hi, all.
I want to refine a PDB file with one zinc ion using 'SetupMetalsMover'.
I have added one zinc ion which is predicted to coordinate with cysteine and histidine.
I noticed there is 'CYZ.params' file and 'residue_types.txt' file ( '/database/chemical/residue_type_sets/fa_standard/residue_types.txt' file ) includes the 'CYZ.params'.
Then, I changed the residue name of cysteine to 'CYZ' (from CYS).
And then, I executed rosettascript to refine my pdb.
Good Day
I have a problem when compiling dalphaball. What could the cause be?
I get a bunch of errors like this:
Hi, I'm kind of new to Rosetta.
I am trying to dock GPCR and G protein complex using local docking, but it turns out that there is some clashes between Interloop 2 and G alpha subunit. How can I solve this problem? Should I use KIC for loop modeling and then use local docking application?
Could you please help me solve this problem?
Thank you
Hi All,
How do you generate parameters for a stapled helix peptide? The residues that are "stapled" are alanines at positions 1 and 5, inclusive. The "staple" is a 8-carbon linker. The flanking residues are all natural amino acids.
Thanks!