The problem hasn't been solved
Hello,
So I've been trying to implement the new trRosetta protocol and I keep getting a segmentation fault error. Is there any idea what I might be doing incorrectly? The Rosetta Crash Log is below and is followed by the output logs (both raw text files are also included as attachments).
Has anyone had trouble with the Hybridize mover in RosettaScripts in the lastest weekly release Rosetta 2021.16 (Release date: Friday, April 23, 2021)? My script that works with older releases has stopped working and seg faults in Stage 4. Other movers, for example FastRelax, work.
Any help is much appreciated! Thanks.
Hello,
I was working on a PDB structures with 3 missing loops. Two of them have more than 15 missing residues. In this case, are the loop modeling methods still applicable? If so, which algorithm should I follow? Can I ask if there is a better way to fill the loops without affecting the existing region in the PDB structure? Thank you!
Dear Rosetta Users,
I have three questions regarding the RosettaLigand application.
Hi guys.
I met a problem when I was doing the clustering. I excuted this command but it was unexpectedly ended killed and had no result. I've 200 pdb files in this folder.
I'll be really grateful if it can be solved.
$ /home/suuo/Rosetta/main/source/bin/cluster.default.linuxgccrelease -database /home/suuo/Rosetta/main/database -in:file:fullatom -cluster:radius 3 -nooutput -out:file:silent ./cluster.out in:file:s *.pdb
………………………………
……………omit………………
………………………………
Hi all.
I'm trying to dock my ligand with HEM to CYP using rosetta script with XML protocol
overall running process seems to complete without any problem, and rosetta script seems to recognize HEM and ligand as separate entity
But in some conformer generated by rosetta-script, there is severe clash between HEM and ligand.
For this kind of conformer, rosetta total_score was extremely high and I could filter out this kind of unfavorable structure based on rosetta score