The problem hasn't been solved
Hello,
I am performing protein-protein docking with multiple constraints. I applied the constraints in full atom mode with these two commands:
-constraints:cst_fa_file myconstraint.cst
-constraints:cst_fa_weight 10
Hello,
I meet a question when I am to run rosettascript. I found three executables but I do not know which one to choose. I am wondering whether some one can help me out. I would be much appreciated.
I found three ways, as below, to run rosetta scripts I am wondering what are differnece in these three executables. Will they give same results for the same inputs. whether settings are same in these three ways.
rosetta_scripts.default.linuxgccrelease
rosetta_scripts.linuxgccrelease
In the rosetta scoring function, what energy term describes backbone-backbone hydrogen bonding between residues on different protein chains
hbond_sr_bb Backbone-backbone hbonds close in primary sequence. All hydrogen bonding terms support canonical and noncanonical types.
hbond_lr_bb Backbone-backbone hbonds distant in primary sequence.
Hello all,
I am new to rosetta trying to follow the tutorials on line. I am currently working on with the mac binaries on MacOS mojave
Seems I cannot generate a score file in the working directory.
the following input is being done within source directory
INPUT: $ROSETTA3/bin/score_jd2.default.macosclangrelease -in:file:s input_files/1qys.pdb
Error:
ERROR: Cannot open file "input_files/1qys.pdb"
ERROR:: Exit from: src/core/import_pose/import_pose.cc line: 362
I'm tryintg to sort the generated sequences from the .spec output with the following command and I use the flag to activate talaris:
~/tools/analysis/apps/gen_pepspec_pwm.py 1cka_spec.spec 3 0.1 binding-prot_score pepspec_background.binding-prot-0.1.pwm -corrections::restore_talaris_behavior
But I get error:
Hello, I am currently unable to correclty compile. I am running a ubuntu virtual machine on win10 (ubuntu 14.04 LTS, GCC version 4.8.4).
The version I am currently using is Rosetta 3.12.
Then try to compile using with the following...
./scons.py mode=release bin
The following error is given
I am trying to use IntearctiveRosetta on windows 10 environment and have zero knowledge about coding.....could anyone help me to solve this error......which comes up when I do a position scan using IntearctiveRosetta.....
Traceback (most recent call last):File "scripts\daemon.py", line 2024, in daemonLoopdoPMutScan()File "scripts\daemon.py", line 503, in doPMutScanos.rename("scanprogress", "scanoutput")WindowsError: [Error 32] The process cannot access the file because it is being used by another process
Hi everyone,
I am trying to use Cterm_amidation.txt. I would like to replace -OH in the C-terminal end with -NH2. However, I get the following error