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I generated a table of images & info of the premade NCAA params in the database
I don't have a problem*, I just wanted to link to a possibly useful resource. Namely, I was playing around with primeval genetic codes and I wanted to to know what the 3-letter code was for one amino acid. As a result I wrote a small script to make a table of images, filenames and three letter codes.
https://github.com/matteoferla/Display-of-preset-Rosetta-NCAAs
Imitating induced fit protocol in SymDock2 without any symmetry constraints
Hello,
Problem: Induced fit in ensemble homo-dimer docking of an IDP.
Residue Pair Energy
Error in src/protocols/membrane/util.cc line: 1224
Hi, I am trying to prepare a MPDocking run (v 2019.35).
Both prepacking as well as actual docking crash with the same message:
ERROR: The SpanningTopology object in MembraneInfo is empty!
ERROR:: Exit from: src/protocols/membrane/util.cc line: 1224
However, the attached log file seems to indicate that the molecule was read correctly. Also the TMspans were build and their center calculated (end of logfile).
FARFAR2 error
Hi ROSIE and FARFAR2 team,
I used FARFAR2 to test the 3D structure prediction of several RNAs two weeks ago with native PDB uploaded. But all the jobs were finally dead with the error message "2-rescore_to_native_or_lowest". Could you tell me why this happened? You can find the sequence, 2D structure, and native PDB in the attachment.
Job Distribution Error
Hello,
I am having a similar issue with the job destribution for the script from the koga 2012 paper:
Script:
ERROR ON MAC ROSETTA
Good afternoon,
I downloaded the rosetta bundle with binaries for the Mac. When trying to compile the suite with ‘./scons.py mode=release bin’ I keep getting this error message.
src/protocols/antibody/database/CDRSetOptionsParser.cc:81:8: error: reference to 'core' is ambiguous
for ( core::Size i = 1; i <= core::Size(CDRNameEnum_proto_total); ++i ) {
^
src/core/types.hh:32:11: note: candidate found by name lookup is 'core'
namespace core {
^
get an increased energy after energy minimization when using different score functions for repacking and energy minimization
Hi,
I am a new user of rosetta. Now I meet some problem that I cannot solve. I am wondering whether you could please help me. I would much appreciated.
ROSETTA design affinity optimization
Hello
I'm trying to to use rosetta design (http://rosettadesign.med.unc.edu) to increase binding affinity between 2 proteins in 1 pdb file.
I want 2 residue ranges to be mutated in chain B but all other residues to remain the same. Therefore I have used this resfile:
NATRO
start
71 - 88 B ALLAAxc EX1
50 - 56 B ALLAAxc EX1
However, the server mutates residues in both chains. How do I force it to only mutate chain B?