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Minimizing and learning energy functions for side-chain prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Yanover, C., Schueler-Furman, O. and Weiss, Y.
Volume: 
15
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
J Comput Biol
Pages: 
899-911
Lab: 
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Other Rosetta Papers

On the role of a conserved, potentially helix-breaking residue in the tRNA-binding alpha-helix of archaeal CCA-adding enzymes

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Cho, H. D., Sood, V. D., Baker, D. and Weiner, A. M.
Volume: 
14
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
RNA
Pages: 
1284-1289
Lab: 
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Publication Type: 
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Publication Subject: 
Other Rosetta Papers

Structural inference of native and partially folded RNA by high-throughput contact mapping

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Das, R., Kudaravalli, M., Jonikas, M., Laederach, A., Fong, R., Schwans, J. P., Baker, D., Piccirilli, J. A., Altman, R. B. and Herschlag, D.
Volume: 
105
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
Proc Natl Acad Sci U S A
Pages: 
4144-4149
Lab: 
Other Labs
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

Structural genomics of pathogenic protozoa: an overview

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Fan, E., Baker, D., Fields, S., Gelb, M. H., Buckner, F. S., Van Voorhis, W. C., Phizicky, E., Dumont, M., Mehlin, C., Grayhack, E., Sullivan, M., Verlinde, C., Detitta, G., Meldrum, D. R., Merritt, E. A., Earnest, T., Soltis, M., Zucker, F., Myler, P. J., Schoenfeld, L., Kim, D., Worthey, L., Lacount, D., Vignali, M., Li, J., Mondal, S., Massey, A., Carroll, B., Gulde, S., Luft, J., Desoto, L., Holl, M., Caruthers, J., Bosch, J., Robien, M., Arakaki, T., Holmes, M., Le Trong, I. and Hol, W. G.
Volume: 
426
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
Methods Mol Biol
Pages: 
497-513
Lab: 
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The structure, dynamics, and energetics of protein adsorption-lessons learned from adsorption of statherin to hydroxyapatite

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Goobes, G., Goobes, R., Shaw, W. J., Gibson, J. M., Long, J. R., Raghunathan, V., Schueler-Furman, O., Popham, J. M., Baker, D., Campbell, C. T., Stayton, P. S. and Drobny, G. P.
Volume: 
45
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
Magn Reson Chem
Pages: 
S32-S47
Lab: 
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Ranking predicted protein structures with support vector regression

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Qiu, J., Sheffler, W., Baker, D. and Noble, W. S.
Volume: 
71
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
Proteins
Pages: 
1175-1182
Lab: 
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The Kir channel immunoglobulin domain is essential for Kir1.1 (ROMK) thermodynamic stability, trafficking and gating

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Fallen, K., Banerjee, S., Sheehan, J., Addison, D., Lewis, L. M., Meiler, J. and Denton, J. S.
Volume: 
3
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Channels (Austin)
Pages: 
57-68
Lab: 
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The evolutionarily conserved residue A653 plays a key role in HERG channel closing

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Stepanovic, S. Z., Potet, F., Petersen, C. I., Smith, J. A., Meiler, J., Balser, J. R. and Kupershmidt, S.
Volume: 
587
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
J Physiol
Pages: 
2555-2566
Lab: 
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Differences in flexibility underlie functional differences in the Ras activators son of sevenless and Ras guanine nucleotide releasing factor 1

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Freedman, T. S., Sondermann, H., Kuchment, O., Friedland, G. D., Kortemme, T. and Kuriyan, J.
Volume: 
17
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
Structure
Pages: 
41-53
Lab: 
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Engineered protein connectivity to actin mimics PDZ-dependent recycling of G protein-coupled receptors but not its regulation by Hrs

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Lauffer, B. E., Chen, S., Melero, C., Kortemme, T., von Zastrow, M. and Vargas, G. A.
Volume: 
284
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2009
Reference: 
J Biol Chem
Pages: 
2448-2458
Lab: 
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