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Rosetta 3 - Applications
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Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
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992 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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1,056 |
by almeida85 Thu, 2022-08-18 07:53 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
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1,048 |
by GebauerJ Tue, 2022-08-16 07:44 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
2,025 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,929 |
by almeida85 Thu, 2022-08-11 00:58 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
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955 |
by eyaaaan Tue, 2022-08-09 21:59 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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1,330 |
by chandana Tue, 2022-08-09 20:36 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
6 |
4,500 |
by chandana Tue, 2022-08-09 20:27 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
2 |
1,523 |
by liuwenxi Fri, 2022-08-05 09:50 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
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903 |
by Roberto Thu, 2022-08-04 07:22 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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889 |
by Roberto Thu, 2022-08-04 07:11 |
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CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
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894 |
by martongadanecz Wed, 2022-08-03 01:05 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
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1,015 |
by sareeves96 Fri, 2022-07-29 09:55 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
1,099 |
by matteoferla Wed, 2022-07-20 10:50 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
1,208 |
by rmoretti Fri, 2022-07-15 13:50 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
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885 |
by zmfowler Thu, 2022-07-14 05:34 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
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1,107 |
by sc19 Thu, 2022-07-14 03:40 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
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1,055 |
by sc19 Thu, 2022-07-14 01:34 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
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824 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
1 |
1,124 |
by rmoretti Fri, 2022-07-08 10:27 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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938 |
by almeida85 Thu, 2022-06-23 05:50 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
3,458 |
by Payne Tue, 2022-06-21 07:25 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,757 |
by yliang20 Wed, 2022-06-15 13:46 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
1,600 |
by yliang20 Tue, 2022-06-07 08:36 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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965 |
by seayoung lee Fri, 2022-05-27 02:45 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
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950 |
by e3lm Thu, 2022-05-26 12:55 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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7,889 |
by e3lm Thu, 2022-05-26 12:51 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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962 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,669 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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968 |
by liuwenxi Wed, 2022-05-18 10:12 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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1,069 |
by e3lm Tue, 2022-05-17 11:58 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
1 |
1,217 |
by rmoretti Tue, 2022-05-17 07:29 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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1,089 |
by wangtao Thu, 2022-05-05 02:46 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
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919 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
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1,397 |
by almeida85 Mon, 2022-05-02 05:05 |
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about “protein mimic designer” by sia » Wed, 2022-04-27 19:59 |
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1,073 |
by sia Wed, 2022-04-27 19:59 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
2,241 |
by dnamkr Fri, 2022-04-22 17:00 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
3,044 |
by Corvin Thu, 2022-04-21 00:50 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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1,272 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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813 |
by Isomerase Mon, 2022-03-28 01:19 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
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1,018 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,676 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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1,586 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
2,235 |
by rmoretti Tue, 2022-03-22 09:10 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
4,739 |
by tingting Tue, 2022-03-15 23:55 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
0 |
881 |
by Ken Mon, 2022-03-14 15:14 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
1,789 |
by guowuchen Mon, 2022-03-07 23:34 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
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1,171 |
by Hirbond Tue, 2022-03-01 13:16 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
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1,354 |
by tbelec Mon, 2022-02-28 12:37 |
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DockingProtocol by Soler » Fri, 2022-02-11 00:12 |
3 |
2,247 |
by gezmi Tue, 2022-02-15 21:47 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
4,028 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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1,299 |
by Prasoon Wed, 2022-02-09 09:04 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
1,079 |
by samuel_k Thu, 2022-01-27 01:08 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
0 |
1,114 |
by Martin Floor Wed, 2022-01-26 07:46 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
0 |
1,413 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
1,105 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
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1,074 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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1,184 |
by Wenithor Thu, 2022-01-06 12:20 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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981 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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1,425 |
by dgm3 Fri, 2021-12-31 17:42 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
1,226 |
by bhavranek Sun, 2021-12-26 21:05 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
3,881 |
by danbo Wed, 2021-12-22 23:51 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
3,051 |
by alonwenger Sat, 2021-12-18 12:32 |
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simple_cycpep_predict with N-term acetylation by Ken » Fri, 2021-12-17 09:49 |
0 |
1,065 |
by Ken Fri, 2021-12-17 09:49 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
1,098 |
by memilton Thu, 2021-12-16 09:09 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
0 |
1,040 |
by Corvin Mon, 2021-12-13 09:07 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
3,402 |
by smlewis Wed, 2021-12-08 13:02 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
0 |
1,005 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
903 |
by Soler Sun, 2021-11-21 22:20 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
6,840 |
by rayyoung Thu, 2021-11-18 10:13 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
893 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
0 |
949 |
by Corvin Tue, 2021-11-16 07:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
1,606 |
by zivben Sat, 2021-11-13 04:49 |
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C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
1 |
1,175 |
by LeonhardJS Fri, 2021-11-12 01:20 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
1,096 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
2,288 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
2 |
1,981 |
by chenna Tue, 2021-10-12 20:51 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
0 |
780 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
872 |
by sam_dc Sat, 2021-10-09 05:38 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
2,527 |
by ozsolomon Thu, 2021-10-07 14:25 |
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Symmetry definition file versions by Jeff Qu » Tue, 2021-09-28 09:53 |
0 |
843 |
by Jeff Qu Tue, 2021-09-28 09:53 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
1 |
1,418 |
by nannemdp Mon, 2021-09-27 14:22 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
0 |
1,024 |
by amorin Mon, 2021-09-27 12:16 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
1,342 |
by matteoferla Wed, 2021-09-15 06:04 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
3,936 |
by e3lm Tue, 2021-09-14 10:02 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
2,150 |
by vizcarra Thu, 2021-08-26 10:16 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
1 |
1,121 |
by everyday847 Mon, 2021-08-16 10:43 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
1,316 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
0 |
847 |
by listofdina Mon, 2021-08-02 06:51 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
1 |
1,121 |
by everyday847 Fri, 2021-07-30 13:26 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
0 |
826 |
by nrollins Mon, 2021-07-26 14:29 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
0 |
792 |
by nrollins Mon, 2021-07-26 14:16 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
7 |
6,773 |
by matteoferla Mon, 2021-07-19 06:13 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
1,534 |
by rmoretti Fri, 2021-07-09 15:05 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
1,648 |
by vmulligan Tue, 2021-07-06 08:27 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
0 |
728 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
2,814 |
by happycaapi Tue, 2021-06-29 15:35 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
1,466 |
by browns02 Tue, 2021-06-29 11:41 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,993 |
by matteoferla Sat, 2021-06-19 03:07 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
1 |
1,201 |
by CameronJA Tue, 2021-06-15 20:02 |