You are here
Rosetta 3 - Applications
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,955 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
1 |
2,217 |
by rmoretti Thu, 2015-08-06 08:57 |
|
|
Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
1 |
1,572 |
by rmoretti Wed, 2019-09-18 10:36 |
|
|
[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
1 |
1,440 |
by brspurri Mon, 2021-01-18 18:14 |
|
|
Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,839 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
1 |
1,478 |
by rmoretti Mon, 2019-08-26 12:17 |
|
|
minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
2,087 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
|
|
Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
1 |
1,121 |
by everyday847 Fri, 2021-07-30 13:26 |
|
|
Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
1 |
1,908 |
by rmoretti Tue, 2022-10-04 07:57 |
|
|
modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
1 |
2,548 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
1 |
2,212 |
by rmoretti Tue, 2015-01-13 07:44 |
|
|
cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
1 |
2,492 |
by rmoretti Tue, 2015-11-24 16:07 |
|
|
loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
1,662 |
by jadolfbr Fri, 2019-05-10 07:53 |
|
|
error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
2,154 |
by xinmiaohe Fri, 2020-01-31 08:23 |
|
|
Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
1 |
2,191 |
by rmoretti Sat, 2017-04-15 13:30 |
|
|
Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
1,856 |
by rmoretti Mon, 2019-06-24 15:19 |
|
|
Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
1 |
1,379 |
by rmoretti Wed, 2020-03-04 09:56 |
|
|
shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
1,208 |
by rmoretti Fri, 2022-07-15 13:50 |
|
|
Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
1 |
2,357 |
by jadolfbr Fri, 2014-10-31 08:45 |
|
|
"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
1 |
1,684 |
by danpf Thu, 2019-10-10 09:55 |
|
|
How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
1 |
1,290 |
by ssrb Mon, 2020-06-22 13:12 |
|
|
antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
1 |
1,551 |
by smlewis Tue, 2019-10-22 09:45 |
|
|
Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
1 |
2,799 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,770 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,996 |
by smlewis Wed, 2016-03-09 04:11 |
|
|
Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
2,060 |
by rmoretti Mon, 2017-05-15 08:54 |
|
|
rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,815 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
1 |
1,808 |
by rmoretti Fri, 2019-03-29 09:58 |
|
|
Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,783 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
1 |
3,229 |
by jadolfbr Mon, 2014-10-20 13:42 |
|
|
Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
1 |
2,287 |
by rmoretti Mon, 2015-05-25 12:37 |
|
|
C-termini remodelling of dimeric structure removes second chain by LeonhardJS » Wed, 2021-10-13 06:23 |
1 |
1,174 |
by LeonhardJS Fri, 2021-11-12 01:20 |
|
|
membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
1 |
2,590 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
1 |
2,263 |
by everyday847 Sun, 2014-09-28 21:16 |
|
|
Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
1 |
2,667 |
by rmoretti Wed, 2015-03-25 12:39 |
|
|
sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
1 |
1,851 |
by jadolfbr Thu, 2017-06-01 10:00 |
|
|
contents of span file by tevang » Mon, 2013-04-15 05:01 |
1 |
2,614 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
1 |
2,048 |
by smlewis Thu, 2015-10-22 08:04 |
|
|
Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
1 |
2,287 |
by smlewis Tue, 2017-02-21 07:58 |
|
|
PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,910 |
by Andre Serobian Wed, 2020-07-08 04:44 |
|
|
homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,968 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
4,039 |
by lanselibai Fri, 2014-09-26 14:58 |
|
|
Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
2,033 |
by rmoretti Wed, 2018-11-21 15:40 |
|
|
Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
3,135 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
2,337 |
by rmoretti Fri, 2015-07-03 14:41 |
|
|
Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
1 |
2,445 |
by rmoretti Wed, 2016-11-30 07:46 |
|
|
docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
2,063 |
by rmoretti Tue, 2018-12-04 08:55 |
|
|
ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
1,226 |
by bhavranek Sun, 2021-12-26 21:05 |
|
|
FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
1,599 |
by rmoretti Wed, 2020-09-16 22:11 |
|
|
Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
1 |
4,289 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
2,238 |
by rmoretti Sun, 2014-07-27 10:48 |
|
|
Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
3,077 |
by rmoretti Thu, 2014-03-13 08:04 |
|
|
Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
3,264 |
by rmoretti Fri, 2015-01-02 11:45 |
|
|
Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
2,040 |
by rmoretti Tue, 2015-11-10 11:10 |
|
|
running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
2,270 |
by rmoretti Tue, 2018-01-30 07:51 |
|
|
Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
1,855 |
by nannemdp Thu, 2019-04-25 07:58 |
|
|
mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
3,001 |
by ssrb Fri, 2020-08-14 09:18 |
|
|
Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
1,190 |
by jlawrie Wed, 2020-08-12 08:47 |
|
|
restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,717 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
2,358 |
by sgourn Tue, 2015-08-18 18:25 |
|
|
UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
2,197 |
by smlewis Mon, 2017-11-13 10:43 |
|
|
Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
1,365 |
by smlewis Fri, 2019-09-27 11:54 |
|
|
How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
1 |
1,829 |
by JackMaguire Fri, 2019-08-16 07:41 |
|
|
Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
1,208 |
by ssrb Tue, 2020-09-29 12:37 |
|
|
CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
2,171 |
by rmoretti Tue, 2015-12-15 09:48 |
|
|
Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
3,103 |
by jharamesh Mon, 2014-11-03 12:50 |
|
|
Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
2,050 |
by rmoretti Fri, 2017-04-21 07:41 |
|
|
AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
1 |
1,543 |
by vmulligan Thu, 2019-06-13 15:01 |
|
|
several question in mpensemble dock by lluoto » Tue, 2024-03-12 07:54 |
1 |
328 |
by lluoto Tue, 2024-03-19 05:28 |
|
|
protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
4,489 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,938 |
by rmoretti Tue, 2014-11-04 08:53 |
|
|
ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
3,265 |
by rmoretti Fri, 2015-09-04 10:25 |
|
|
output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
1,680 |
by malkeet.singh Wed, 2017-12-06 02:02 |
|
|
Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
3,450 |
by rmoretti Fri, 2019-03-29 12:25 |
|
|
InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
3,022 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
2,197 |
by rmoretti Thu, 2014-08-28 09:42 |
|
|
error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
2,165 |
by rmoretti Tue, 2016-07-12 08:56 |
|
|
Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,761 |
by rmoretti Thu, 2018-09-20 09:23 |
|
|
Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
1 |
1,489 |
by rmoretti Mon, 2019-08-26 12:03 |
|
|
trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
1,272 |
by shivarawat115 Mon, 2022-04-11 16:10 |
|
|
cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
3,102 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
1 |
1,494 |
by cryosky Mon, 2021-03-01 21:37 |
|
|
Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
1 |
2,302 |
by rmoretti Tue, 2014-11-18 09:10 |
|
|
Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,902 |
by cdbahl Sat, 2017-02-18 13:02 |
|
|
Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
1 |
1,699 |
by rmoretti Fri, 2019-04-05 00:18 |
|
|
Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
1 |
1,471 |
by JackMaguire Fri, 2019-11-22 13:45 |
|
|
Cannot install DAlphaBall by gerdos » Fri, 2023-10-13 07:55 |
1 |
797 |
by Seongsung Fri, 2023-11-24 04:52 |
|
|
How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
3,233 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
1 |
2,838 |
by rmoretti Mon, 2015-05-25 11:30 |
|
|
Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
1 |
1,270 |
by rmoretti Sun, 2020-11-08 18:56 |
|
|
connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
1 |
1,096 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
|
|
Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
1 |
2,144 |
by smlewis Mon, 2015-06-08 06:35 |
|
|
Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
1 |
2,446 |
by rmoretti Fri, 2016-10-14 08:42 |
|
|
Error in rosetta minimization by syntekabio2019 » Wed, 2024-04-17 07:04 |
1 |
222 |
by rmoretti Wed, 2024-04-17 08:50 |
|
|
Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
3,692 |
by AJVincelli Sun, 2018-11-25 11:29 |
|
|
Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
1 |
2,760 |
by rmoretti Wed, 2014-12-03 19:07 |
|
|
Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,779 |
by rmoretti Thu, 2019-05-09 15:40 |
|
|
Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
1 |
1,693 |
by rmoretti Tue, 2017-10-17 09:03 |
|
|
ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
1 |
2,250 |
by jeliazkov Fri, 2018-12-07 12:51 |
|
|
The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
1 |
1,440 |
by nannemdp Sun, 2020-06-07 08:01 |