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Rosetta 3 - Applications
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
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1,911 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
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2,969 |
by smlewis Mon, 2014-04-21 06:48 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
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4,040 |
by lanselibai Fri, 2014-09-26 14:58 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
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2,035 |
by rmoretti Wed, 2018-11-21 15:40 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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1,600 |
by rmoretti Wed, 2020-09-16 22:11 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
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2,239 |
by rmoretti Sun, 2014-07-27 10:48 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
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3,078 |
by rmoretti Thu, 2014-03-13 08:04 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
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3,265 |
by rmoretti Fri, 2015-01-02 11:45 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
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2,041 |
by rmoretti Tue, 2015-11-10 11:10 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
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2,272 |
by rmoretti Tue, 2018-01-30 07:51 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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1,857 |
by nannemdp Thu, 2019-04-25 07:58 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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3,002 |
by ssrb Fri, 2020-08-14 09:18 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,927 |
by jarod Mon, 2014-04-21 06:47 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
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3,136 |
by rmoretti Mon, 2014-04-21 06:48 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
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2,338 |
by rmoretti Fri, 2015-07-03 14:41 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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2,446 |
by rmoretti Wed, 2016-11-30 07:46 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
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2,065 |
by rmoretti Tue, 2018-12-04 08:55 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
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1,227 |
by bhavranek Sun, 2021-12-26 21:05 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
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2,718 |
by jadolfbr Mon, 2014-04-21 06:48 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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2,359 |
by sgourn Tue, 2015-08-18 18:25 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
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2,199 |
by smlewis Mon, 2017-11-13 10:43 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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1,367 |
by smlewis Fri, 2019-09-27 11:54 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,831 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
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1,209 |
by ssrb Tue, 2020-09-29 12:37 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
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2,172 |
by rmoretti Tue, 2015-12-15 09:48 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
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1,191 |
by jlawrie Wed, 2020-08-12 08:47 |
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several question in mpensemble dock by lluoto » Tue, 2024-03-12 07:54 |
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329 |
by lluoto Tue, 2024-03-19 05:28 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,557 |
by ytao Mon, 2014-04-21 06:48 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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4,490 |
by rmoretti Mon, 2014-04-21 06:48 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,939 |
by rmoretti Tue, 2014-11-04 08:53 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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3,266 |
by rmoretti Fri, 2015-09-04 10:25 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,682 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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3,452 |
by rmoretti Fri, 2019-03-29 12:25 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,582 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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2,198 |
by rmoretti Thu, 2014-08-28 09:42 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
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2,166 |
by rmoretti Tue, 2016-07-12 08:56 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,763 |
by rmoretti Thu, 2018-09-20 09:23 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,491 |
by rmoretti Mon, 2019-08-26 12:03 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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1,273 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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3,104 |
by jharamesh Mon, 2014-11-03 12:50 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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2,052 |
by rmoretti Fri, 2017-04-21 07:41 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,545 |
by vmulligan Thu, 2019-06-13 15:01 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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1,495 |
by cryosky Mon, 2021-03-01 21:37 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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2,303 |
by rmoretti Tue, 2014-11-18 09:10 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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2,904 |
by cdbahl Sat, 2017-02-18 13:02 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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1,701 |
by rmoretti Fri, 2019-04-05 00:18 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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1,473 |
by JackMaguire Fri, 2019-11-22 13:45 |
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Cannot install DAlphaBall by gerdos » Fri, 2023-10-13 07:55 |
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798 |
by Seongsung Fri, 2023-11-24 04:52 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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3,192 |
by dgront Mon, 2014-04-21 06:47 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,389 |
by jadolfbr Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,698 |
by smlewis Mon, 2014-04-21 06:47 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,839 |
by rmoretti Mon, 2015-05-25 11:30 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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1,271 |
by rmoretti Sun, 2020-11-08 18:56 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
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1,097 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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2,396 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in rosetta minimization by syntekabio2019 » Wed, 2024-04-17 07:04 |
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223 |
by rmoretti Wed, 2024-04-17 08:50 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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3,694 |
by AJVincelli Sun, 2018-11-25 11:29 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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2,761 |
by rmoretti Wed, 2014-12-03 19:07 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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1,781 |
by rmoretti Thu, 2019-05-09 15:40 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,549 |
by smlewis Mon, 2014-04-21 06:47 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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2,145 |
by smlewis Mon, 2015-06-08 06:35 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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2,447 |
by rmoretti Fri, 2016-10-14 08:42 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,720 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,695 |
by rmoretti Tue, 2017-10-17 09:03 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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2,252 |
by jeliazkov Fri, 2018-12-07 12:51 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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1,441 |
by nannemdp Sun, 2020-06-07 08:01 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,799 |
by rmoretti Wed, 2018-02-21 15:21 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,470 |
by danpf Fri, 2020-02-21 18:23 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
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2,771 |
by rmoretti Mon, 2014-04-21 06:48 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,840 |
by smlewis Mon, 2014-04-21 06:47 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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2,767 |
by smlewis Mon, 2014-04-21 06:48 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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1,579 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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1,343 |
by matteoferla Wed, 2021-09-15 06:04 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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3,294 |
by smlewis Mon, 2014-05-12 08:32 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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3,305 |
by rmoretti Fri, 2016-04-29 09:21 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,708 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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1,100 |
by matteoferla Wed, 2022-07-20 10:50 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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2,354 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,629 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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1,972 |
by danpf Sun, 2020-08-30 22:23 |
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Error in score funtion "hack_elec 0.42" by intomybioverse » Sun, 2024-03-17 06:33 |
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250 |
by rmoretti Mon, 2024-03-18 08:55 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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2,591 |
by smlewis Mon, 2014-04-21 06:48 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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2,221 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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2,049 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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1,202 |
by CameronJA Tue, 2021-06-15 20:02 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
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2,615 |
by smlewis Mon, 2014-04-21 06:47 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,806 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,614 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,634 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,795 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
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3,295 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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2,055 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,879 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,978 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,611 |
by bjharris Wed, 2020-07-01 23:25 |
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Unsatisfied interface H-bond in Ligand docking by Prasanth Kumar » Thu, 2013-07-18 12:04 |
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4,290 |
by rmoretti Mon, 2014-04-21 06:48 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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2,370 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,362 |
by brspurri Wed, 2021-01-20 08:11 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,637 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
1 |
1,312 |
by rmoretti Fri, 2020-11-27 10:47 |