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Rosetta 3 - Applications
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,852 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
8,049 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
7,813 |
by linucks Mon, 2016-06-20 12:02 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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2,447 |
by rmoretti Fri, 2016-10-14 08:42 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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2,197 |
by rmoretti Thu, 2014-08-28 09:42 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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813 |
by Isomerase Mon, 2022-03-28 01:19 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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2,024 |
by rmoretti Thu, 2024-06-20 11:44 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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5,983 |
by jljbbc Mon, 2014-04-21 06:47 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
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3,295 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
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2,488 |
by smlewis Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,690 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
6,083 |
by xfliu Mon, 2014-04-21 06:47 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
2,251 |
by rmoretti Thu, 2014-10-23 13:55 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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3,895 |
by rmoretti Fri, 2020-07-10 09:59 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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1,239 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,968 |
by mumdonar Mon, 2014-04-21 06:48 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
4,299 |
by smlewis Mon, 2014-04-21 06:47 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
9,082 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,743 |
by rmoretti Thu, 2017-04-20 13:59 |
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Problems met when do H3_modeling in the antibody design protocol by ng98 » Sun, 2024-05-12 18:40 |
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270 |
by rmoretti Thu, 2024-06-20 13:11 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
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4,146 |
by RMJ Mon, 2014-04-21 06:47 |
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Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
15,603 |
by Basantab Mon, 2014-04-21 06:47 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,900 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
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2,808 |
by mdidonato Wed, 2014-06-04 14:55 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
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2,435 |
by dyu Thu, 2017-09-28 18:54 |
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Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
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9,178 |
by glemmon Mon, 2014-04-21 06:47 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
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7,404 |
by Aben Tue, 2023-04-18 01:31 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
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1,178 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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949 |
by Corvin Tue, 2021-11-16 07:22 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
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2,955 |
by rmoretti Mon, 2014-04-21 06:48 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
4,137 |
by xun Mon, 2014-04-21 06:47 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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2,903 |
by cdbahl Sat, 2017-02-18 13:02 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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981 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
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6,418 |
by rmoretti Mon, 2014-04-21 06:47 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
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1,654 |
by sam_dc Fri, 2021-03-26 12:04 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,572 |
by rmoretti Wed, 2019-07-10 09:24 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
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2,284 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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1,780 |
by rmoretti Thu, 2019-05-09 15:40 |
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Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
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889 |
by mrinal Mon, 2023-03-20 15:58 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,786 |
by ajasja Wed, 2019-05-15 15:40 |
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protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
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967 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
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8,030 |
by dimaio Mon, 2014-04-21 06:47 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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4,639 |
by rmoretti Mon, 2014-04-21 06:48 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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1,563 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
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2,742 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,469 |
by danpf Fri, 2020-02-21 18:23 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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4,489 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
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2,041 |
by rmoretti Tue, 2015-11-10 11:10 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
1 |
1,930 |
by rmoretti Sun, 2019-08-25 19:15 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,636 |
by rmoretti Wed, 2018-11-21 15:10 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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3,463 |
by ahonegger Fri, 2014-06-06 09:31 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
1,133 |
by Corvin Wed, 2020-12-30 09:21 |
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PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
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817 |
by josiefanxu Tue, 2024-05-14 21:17 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
1,342 |
by matteoferla Wed, 2021-09-15 06:04 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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2,075 |
by orionshih Wed, 2019-06-26 03:54 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
3,881 |
by danbo Wed, 2021-12-22 23:51 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,762 |
by rmoretti Thu, 2018-09-20 09:23 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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1,645 |
by rmoretti Fri, 2018-08-03 08:16 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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889 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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11,233 |
by lanselibai Tue, 2014-10-07 02:58 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
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4,019 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,825 |
by smlewis Mon, 2018-05-07 11:42 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,995 |
by rmoretti Mon, 2017-02-20 08:09 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
5,498 |
by rmoretti Tue, 2016-07-12 09:35 |
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RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
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571 |
by skorro Fri, 2023-07-28 12:20 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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3,040 |
by rmoretti Wed, 2015-03-25 11:33 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,370 |
by banshee Mon, 2016-09-12 23:41 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,871 |
by shrutikhare Fri, 2014-04-18 23:11 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,773 |
by Martin Floor Mon, 2017-05-15 11:13 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
3,131 |
by rmoretti Tue, 2018-02-06 09:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
6 |
6,704 |
by franfdez Mon, 2014-04-21 06:47 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
2,505 |
by smlewis Thu, 2020-05-21 21:05 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,844 |
by smlewis Fri, 2018-09-14 10:34 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,860 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,669 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
0 |
1,113 |
by Martin Floor Wed, 2022-01-26 07:46 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,975 |
by brspurri Sat, 2017-08-26 07:08 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
2,238 |
by rmoretti Sun, 2014-07-27 10:48 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
3,693 |
by AJVincelli Sun, 2018-11-25 11:29 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,672 |
by rmoretti Mon, 2023-02-06 15:06 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
3,203 |
by rmoretti Tue, 2017-03-28 08:51 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
2,697 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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3,018 |
by rmoretti Mon, 2015-01-26 12:15 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
1,857 |
by rmoretti Mon, 2019-06-24 15:19 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
6,012 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
1,707 |
by rmoretti Fri, 2018-08-03 07:54 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
6,399 |
by nannemdp Mon, 2014-04-21 06:47 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
3,238 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
3,402 |
by smlewis Wed, 2021-12-08 13:02 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,745 |
by rmoretti Fri, 2018-08-24 11:28 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
1 |
1,582 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
3,475 |
by rmoretti Wed, 2018-03-07 08:44 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
2,570 |
by rmoretti Mon, 2017-03-13 08:01 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
0 |
1,040 |
by Corvin Mon, 2021-12-13 09:07 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,849 |
by felipet Thu, 2014-07-17 10:13 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
2,355 |
by lanselibai Fri, 2019-12-27 09:38 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
0 |
1,568 |
by lanselibai Sat, 2015-01-17 07:57 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
0 |
959 |
by ozyo Tue, 2020-12-29 09:41 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
2 |
679 |
by lluoto Wed, 2024-02-21 17:39 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
0 |
728 |
by Elijah_Hix Fri, 2021-07-02 07:25 |