Hi! I am trying to run the antibody design protocol. But when I try to do H3 modeling using the abH3.flags downloaded from the Rosetta3.13 whose content shown below:

#how to run antibody mode -- these are the current best-practices
-antibody::remodel              perturb_kic
-antibody::snugfit              true
-antibody::refine               refine_kic
-antibody::cter_insert          false
-antibody::flank_residue_min    true
-antibody::bad_nter             false
-antibody::h3_filter            false
-antibody::h3_filter_tolerance  5
-antibody:constrain_vlvh_qq

#more standard settings, for packages used by antibody_H3
-ex1
-ex2
-extrachi_cutoff 0

#these are standard settings for kic/ngk
-loops:legacy_kic false
-loops:kic_min_after_repack true
-loops:kic_omega_sampling
-loops:allow_omega_move true    ### remove 'true' and loop::?
-kic_bump_overlap_factor 0.36
-loops:ramp_fa_rep
-loops:ramp_rama
-loops:refine_outer_cycles 5

#These enable the kink constraints.  Increase the weight if you want tighter kink constraints.
-antibody:constrain_cter
-constraints:cst_weight 1.0

The first problem I met is: [FILE]: src/utility/options/OptionCollection.cc [LINE]: 1468 [START_MESSAGE]

Option matching -antibody:remodel not found in command line top-level context

Did you mean: -loops:remodel

                            -remodel

[END_MESSAGE] [END_CRASH_REPORT]

After I deleted "-antibody::remodel", another error occurred:

[FILE]: src/utility/options/OptionCollection.cc [LINE]: 1468 [START_MESSAGE] Option matching -antibody:refine not found in command line top-level context

Did you mean: -RBSegmentRelax:rb_file

                           -SSrbrelax:rb_file

                           -antibody:refine_h3

                            -loops:refine

                            -packing:resfile

                            -smhybrid:fa_refine

                            -smhybrid:refine

[END_MESSAGE] [END_CRASH_REPORT]

I changed "-antibody :: refine" to "-antibody::refine_h3" as it shows in the ROSETTA_CRASH.log and rerun again, but the third problem came out: Error: Illegal value for boolean option -antibody:refine_h3 specified: refine_kic

This is my command line:

nohup /home/gaon/biosoftware/rosetta313/main/source/bin/antibody_H3.hdf5.linuxgccrelease @abH3.flags -antibody:auto_generate_kink_constraint -antibody:all_atom_mode_kink_constraint -out:file:scorefile H3_modeling_scores.fasc -multiple_processes_writing_to_one_directory -out:path:pdb H3_modeling > h3_modeling-0.log 2>&1

I used rosetta version 3.13 and I used antibody_H3.hdf5.linuxgccrelease. I would appreciate if anyone could tell me how to fix those errors and what should I changed to continue the protocol. Thank you!