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Rosetta 3 - Applications
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
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4,925 |
by rmoretti Mon, 2014-04-21 06:47 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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980 |
by jlawrie Tue, 2020-09-15 12:52 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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1,298 |
by evo_umich Mon, 2018-04-02 12:13 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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1,218 |
by mbakalar Fri, 2018-08-31 13:06 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,720 |
by smlewis Mon, 2014-04-21 06:47 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
4,157 |
by smlewis Mon, 2014-04-21 06:47 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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4,219 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
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2,961 |
by cam11 Wed, 2014-08-13 10:06 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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826 |
by nrollins Mon, 2021-07-26 14:29 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
3,389 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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792 |
by nrollins Mon, 2021-07-26 14:16 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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836 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
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3,653 |
by michael_luntan Mon, 2014-04-21 06:47 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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6,512 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
5 |
5,940 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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3,257 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,840 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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2,898 |
by smlewis Mon, 2014-04-21 06:47 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,491 |
by jadolfbr Tue, 2020-01-28 09:13 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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2,409 |
by rmoretti Tue, 2015-11-24 16:16 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
10 |
12,410 |
by kamau Mon, 2014-09-22 09:39 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,541 |
by kamau Wed, 2014-09-24 11:35 |
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FixedBB design output no beta strands by tkoh » Fri, 2023-08-25 01:02 |
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556 |
by rmoretti Tue, 2023-08-29 20:13 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
5,668 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
15,919 |
by protos_heis Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
8,244 |
by Anonymous Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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5,157 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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5,514 |
by tylerborrman Mon, 2015-09-28 09:30 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
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7,409 |
by albumns Mon, 2014-04-21 06:47 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,628 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
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2,800 |
by smlewis Mon, 2014-04-21 06:47 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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2,729 |
by vmulligan Mon, 2020-03-02 13:40 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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3,165 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
3,190 |
by rmoretti Mon, 2018-11-12 14:35 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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1,883 |
by code_Monkey Tue, 2021-04-27 12:11 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
1 |
2,056 |
by Derek Wed, 2016-04-27 01:31 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
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882 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
5,210 |
by smlewis Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
4,986 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
14 |
38,420 |
by rmoretti Mon, 2021-06-14 12:56 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
1,079 |
by samuel_k Thu, 2022-01-27 01:08 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
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919 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
4,091 |
by Pernille Thu, 2014-07-03 07:21 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
2,190 |
by Pernille Fri, 2014-06-20 00:17 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
1,600 |
by rmoretti Wed, 2020-09-16 22:11 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
2,052 |
by rmoretti Fri, 2017-04-21 07:41 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,870 |
by kalabharath Wed, 2015-04-29 16:21 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
1 |
2,264 |
by everyday847 Sun, 2014-09-28 21:16 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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5,203 |
by attesor Tue, 2015-01-27 02:20 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
5 |
6,098 |
by rmoretti Thu, 2017-08-24 08:19 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
0 |
1,083 |
by almeida85 Mon, 2020-08-31 07:17 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
7,198 |
by rmoretti Mon, 2014-04-21 10:47 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
4,096 |
by rmoretti Fri, 2018-11-23 11:23 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
1,106 |
by Ruska322 Sat, 2019-09-07 05:21 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
1,100 |
by matteoferla Wed, 2022-07-20 10:50 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,974 |
by lanselibai Tue, 2015-02-24 02:36 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,742 |
by maxebert Mon, 2014-04-21 06:47 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
15 |
13,784 |
by belousoff Mon, 2017-06-26 16:46 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
8 |
3,355 |
by Minghui-Du Sun, 2024-03-24 21:12 |
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Errors about rifdock step 15 by ng98 » Thu, 2024-02-01 17:41 |
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401 |
by ng98 Thu, 2024-02-01 17:41 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,890 |
by rmoretti Mon, 2014-04-21 06:47 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
2,156 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
6,847 |
by rayyoung Thu, 2021-11-18 10:13 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,858 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
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558 |
by rmoretti Thu, 2023-07-20 10:08 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
4,692 |
by smlewis Mon, 2014-04-21 06:47 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
2 |
1,761 |
by Astghik Thu, 2020-12-03 02:35 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
2 |
1,582 |
by jxw Wed, 2023-10-11 10:04 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
1,227 |
by bhavranek Sun, 2021-12-26 21:05 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
2,167 |
by rmoretti Tue, 2016-07-12 08:56 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
1 |
2,484 |
by gsuchunli Mon, 2016-07-25 13:56 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
0 |
676 |
by almeida85 Tue, 2023-05-16 01:00 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
5 |
3,440 |
by vmulligan Fri, 2020-04-10 02:54 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
4,401 |
by rmoretti Tue, 2019-07-09 10:13 |
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Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap) by Seongsung » Fri, 2023-11-24 05:09 |
0 |
329 |
by Seongsung Fri, 2023-11-24 13:14 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
0 |
1,107 |
by sc19 Thu, 2022-07-14 03:40 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
1 |
1,567 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
885 |
by zmfowler Thu, 2022-07-14 05:34 |
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Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
19 |
29,810 |
by oerbilgin Mon, 2014-04-21 06:47 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,714 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,983 |
by Danielsebas Tue, 2019-09-17 01:03 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,784 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
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333 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,954 |
by subha Fri, 2017-06-09 15:42 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
5,277 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
11,506 |
by akpole Mon, 2014-04-21 06:47 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
7,903 |
by weitzner Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
5,773 |
by rmoretti Thu, 2015-04-30 16:46 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
1,208 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,695 |
by scyphs Mon, 2020-08-10 08:09 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
4,537 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
4,155 |
by aloshbau Mon, 2014-04-21 06:47 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
3 |
4,860 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
6 |
6,239 |
by rmoretti Tue, 2017-07-18 09:00 |
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Error Run Blueprint File by ileanexis » Thu, 2024-03-07 10:28 |
0 |
206 |
by ileanexis Thu, 2024-03-07 10:28 |
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Error reading in/out glycosylated silent file - "Can't create a polymer bond after residue due to incompatible type" by amorin » Mon, 2021-09-27 12:16 |
0 |
1,024 |
by amorin Mon, 2021-09-27 12:16 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
1 |
2,710 |
by smlewis Mon, 2014-04-21 06:47 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
1 |
1,975 |
by smlewis Thu, 2017-06-22 13:31 |
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Error in snugdock application by syntekabio2019 » Tue, 2024-05-28 00:59 |
1 |
161 |
by rmoretti Thu, 2024-06-20 13:45 |
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Error in score funtion "hack_elec 0.42" by intomybioverse » Sun, 2024-03-17 06:33 |
1 |
250 |
by rmoretti Mon, 2024-03-18 08:55 |