Dear friends,
As a new learner of rosetta, I encountered an error "chain_id A represents more than one chain!" after I downloaded the 5ugy.pdb file from RCSB PDB database and renumbered to the AHo Scheme with PyIgClassify Server.
If anyone can help me with this issue? Any help would be appreciated.
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RAbD requires a single antibody to be in the structure - you just need to include only the chain you are interested in before using PyIgClassify.