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Rosetta 3 - General
Topic / Topic starter |
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Error score_scatter_plot.py by jrcf » Wed, 2015-12-30 05:46 |
2 |
3,538 |
by jrcf Fri, 2016-02-12 16:41 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
3 |
5,124 |
by rmoretti Wed, 2015-08-12 15:03 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
2,658 |
by sgaray Fri, 2021-06-25 11:26 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
0 |
1,364 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Error using InterfaceHoles filter by SenyorDrew » Fri, 2017-04-14 08:55 |
4 |
4,881 |
by SenyorDrew Mon, 2017-07-24 11:06 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
0 |
1,683 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
4 |
1,326 |
by Wexter300 Wed, 2023-01-25 12:34 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
2 |
3,514 |
by jos Mon, 2014-04-21 06:47 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
9,589 |
by rmoretti Mon, 2014-04-21 06:47 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
14 |
15,276 |
by phanvy Wed, 2014-06-18 07:50 |
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error when running beta_strand_homodimer_design by szypanther » Sun, 2014-05-25 20:22 |
2 |
3,702 |
by szypanther Mon, 2014-05-26 22:03 |
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Error when running "plot_LHOC.py" by Sunyp_IM » Sun, 2017-08-13 05:54 |
5 |
4,532 |
by smlewis Wed, 2017-08-16 08:30 |
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Error when running AqueousPoreFinder protocol by mluengo » Mon, 2023-12-11 02:55 |
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331 |
by mluengo Mon, 2023-12-11 03:13 |
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Error when running enzyme_design tutorial by linucks » Fri, 2017-06-30 12:26 |
4 |
3,936 |
by linucks Mon, 2017-07-03 09:50 |
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Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
12 |
14,007 |
by rmoretti Mon, 2014-10-06 16:50 |
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Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
11 |
11,886 |
by G Mustafa Fri, 2021-09-10 08:20 |
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Error when trying to use xml script to design PDB by Wexter300 » Fri, 2023-02-24 13:29 |
1 |
761 |
by rmoretti Fri, 2023-02-24 13:58 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
5 |
4,302 |
by jadolfbr Mon, 2019-01-28 08:46 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
1 |
3,003 |
by amelie Tue, 2014-09-30 14:29 |
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Error when using published constraints file by Delfosse57 » Thu, 2023-08-17 11:22 |
2 |
682 |
by ikalvet Mon, 2023-08-21 05:52 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
0 |
724 |
by lsong2 Thu, 2021-11-18 10:31 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
1 |
1,326 |
by windmill Thu, 2020-06-18 21:32 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,801 |
by saxen Mon, 2016-04-25 10:38 |
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Error while trying to run r_noe_assign by sn » Mon, 2017-03-13 11:40 |
1 |
1,753 |
by rmoretti Tue, 2017-03-28 09:02 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
0 |
999 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Error with fragment picking by gserci » Mon, 2024-06-17 17:37 |
1 |
62 |
by rmoretti Thu, 2024-06-20 13:20 |
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Error with non-canonical amino acid in SnugDock. by sk0319 » Thu, 2016-12-29 16:12 |
8 |
7,622 |
by sk0319 Wed, 2017-01-11 10:52 |
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Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
3 |
1,181 |
by rmoretti Mon, 2023-01-30 08:04 |
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Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
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656 |
by ajasja Wed, 2023-04-05 00:20 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
0 |
605 |
by He Xiao Mon, 2022-11-07 04:10 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
3 |
2,665 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Thu, 2016-06-30 11:06 |
2 |
4,275 |
by rmoretti Tue, 2016-07-12 08:18 |
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ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed by ahmadkhalifa » Wed, 2017-12-06 07:38 |
13 |
9,397 |
by brandon.frenz Thu, 2018-03-08 09:28 |
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ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr by alove1 » Sat, 2023-10-28 17:19 |
3 |
791 |
by alove1 Mon, 2023-10-30 13:18 |
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ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
6 |
1,784 |
by rmoretti Tue, 2023-05-16 07:10 |
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ERROR: compiling rosetta3.1 with MPI by biofisikx » Thu, 2010-08-05 16:00 |
6 |
6,686 |
by smlewis Mon, 2014-04-21 06:47 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
0 |
962 |
by nferruz Fri, 2020-08-28 06:05 |
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ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query! by Anonymous » Sat, 2012-09-08 09:33 |
1 |
3,123 |
by Anonymous Mon, 2014-04-21 06:47 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
3 |
3,812 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: filtered_alignments.size() > 0 by jhbrown » Tue, 2012-01-17 13:28 |
2 |
2,612 |
by jhbrown Mon, 2014-04-21 06:47 |
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ERROR: FragmentIO: could not open file by ahmadkhalifa » Wed, 2018-01-31 13:30 |
1 |
2,421 |
by rmoretti Wed, 2018-01-31 14:57 |
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ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
1 |
2,281 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
2 |
1,999 |
by szcshr123 Fri, 2021-02-26 14:41 |
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ERROR: Option matching -s not found in command line top-level context by xxx » Wed, 2011-04-20 05:38 |
15 |
20,089 |
by rmoretti Mon, 2014-04-21 06:47 |
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ERROR: PDB reader is ignoring atom by phanvy » Wed, 2014-04-16 17:59 |
2 |
3,829 |
by phanvy Mon, 2014-04-21 03:58 |
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Error: Some problem with atom_id_mask in defining atom_id_map by galvaner » Tue, 2016-03-01 13:23 |
1 |
1,856 |
by rmoretti Thu, 2016-04-28 15:57 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
1 |
2,012 |
by rmoretti Thu, 2022-04-07 07:51 |
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ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
1 |
3,481 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
1 |
2,245 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
2 |
1,185 |
by almeida85 Thu, 2022-08-11 00:32 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
8,069 |
by rmoretti Tue, 2019-07-09 10:29 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
3 |
3,865 |
by harshkhare Mon, 2014-04-21 06:47 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
10 |
8,667 |
by smlewis Tue, 2018-06-19 09:28 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
1 |
1,117 |
by rmoretti Tue, 2022-08-09 06:52 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
3,139 |
by Kazu Mon, 2020-05-18 10:52 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
0 |
1,227 |
by zhoubin Fri, 2019-01-04 13:14 |
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Errors in scorefiles after running Design by Jhreed » Tue, 2016-03-29 10:25 |
4 |
4,129 |
by smlewis Wed, 2016-03-30 09:52 |
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Errors Rosetta symm refine by ms4392 » Fri, 2016-10-21 13:56 |
1 |
2,194 |
by rmoretti Mon, 2016-11-14 14:26 |
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errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
7 |
8,024 |
by jurkm Mon, 2014-04-21 06:47 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
7,642 |
by G Mustafa Fri, 2021-09-10 01:16 |
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ETABLE constraint function type by allan.ferrari » Tue, 2017-01-10 08:01 |
8 |
6,669 |
by smlewis Sun, 2017-01-15 18:14 |
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Evaluate Docking Result by byin » Thu, 2014-07-03 11:31 |
1 |
2,657 |
by rmoretti Wed, 2014-07-16 08:07 |
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Evaluating energies on non-standard rotamer set by pachecoj » Sat, 2014-07-26 16:27 |
5 |
5,180 |
by pachecoj Sat, 2014-08-09 06:33 |
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Every thing Ok in PC end Error on Server by jrcf » Tue, 2016-03-22 07:21 |
8 |
8,258 |
by jrcf Wed, 2016-03-23 12:16 |
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Expanding the silent file by jharamesh » Fri, 2018-01-12 09:15 |
2 |
2,200 |
by rmoretti Mon, 2018-01-15 14:35 |
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Explanation of constraint functions? by aloshbau » Mon, 2015-12-14 22:38 |
2 |
2,592 |
by aloshbau Mon, 2015-12-14 23:30 |
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Explanations to membrane_abinitio options by justin » Wed, 2010-02-10 01:14 |
3 |
3,396 |
by justin Mon, 2014-04-21 06:47 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
1,559 |
by matteoferla Thu, 2021-09-02 03:50 |
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extract 10001+ pdbs by viochemist » Thu, 2010-07-29 16:25 |
1 |
2,018 |
by smlewis Mon, 2014-04-21 06:47 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
1 |
1,876 |
by rmoretti Fri, 2017-09-08 15:15 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
1 |
1,286 |
by zivben Sat, 2021-07-31 08:16 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
2 |
1,961 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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extraction of pdbs from silent.out files on Mac by pramod » Tue, 2014-01-07 11:43 |
5 |
7,579 |
by rmoretti Mon, 2014-04-21 06:48 |
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Extremely low interface scores with "local refinement" by eminegenetics » Wed, 2017-03-29 12:24 |
1 |
2,148 |
by rmoretti Wed, 2017-03-29 12:37 |
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Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
3 |
5,296 |
by smlewis Mon, 2014-04-21 06:47 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
0 |
612 |
by biotech Wed, 2022-10-26 11:17 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
1,154 |
by obdulia Wed, 2018-04-18 00:45 |
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FARFAR2 Error With Secondary Structure File by bdh81 » Thu, 2023-11-02 09:01 |
2 |
618 |
by bdh81 Sun, 2023-11-05 16:04 |
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FARFAR2 error: [ERROR: Not complementary at positions] by Eden » Sat, 2023-11-18 02:39 |
0 |
302 |
by Eden Sat, 2023-11-18 02:39 |
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FARFAR2 error: no edge found that contains seqpos! by mandar » Tue, 2024-06-18 18:39 |
2 |
27 |
by rmoretti Thu, 2024-06-20 13:13 |
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fastdesign with constraints in RosettaScripts by staciekim » Wed, 2017-11-29 13:33 |
1 |
1,945 |
by rmoretti Sat, 2017-12-02 10:22 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
3 |
5,184 |
by rmoretti Mon, 2014-04-21 06:48 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
1 |
1,732 |
by matteoferla Thu, 2021-06-03 08:24 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
6 |
7,812 |
by tigerous Mon, 2014-04-21 06:47 |
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Feedback for Loopmodeling module by zharmad » Tue, 2013-05-14 03:22 |
1 |
2,120 |
by rmoretti Mon, 2014-04-21 06:47 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
3 |
1,205 |
by rmoretti Mon, 2023-05-15 15:23 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
1,493 |
by smlewis Wed, 2019-05-29 13:21 |
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filter score by I_sc and keep top 1000 by aaj » Tue, 2016-01-19 07:13 |
2 |
2,997 |
by aaj Mon, 2016-02-22 07:43 |
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Filters saying atom type does not exist on residue by mdm95 » Mon, 2024-03-04 15:13 |
1 |
353 |
by mdm95 Tue, 2024-03-05 14:05 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
0 |
926 |
by adityapadhi Wed, 2020-06-24 01:29 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
3 |
3,734 |
by smlewis Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,843 |
by einew Mon, 2014-04-21 06:47 |
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Fitting a structure with an unrecognized residue to an EM density by ahmadkhalifa » Tue, 2017-12-05 14:44 |
2 |
2,369 |
by ahmadkhalifa Wed, 2017-12-06 12:30 |
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Fix back bone design fixbb by Lindsay » Tue, 2012-03-06 12:30 |
26 |
23,521 |
by Anonymous Mon, 2014-04-21 06:47 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
4,604 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fix missing backbone residues by Matthys » Mon, 2010-05-03 09:03 |
2 |
3,777 |
by Matthys Mon, 2014-04-21 06:47 |
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fixbb and HETATM by doranhen » Mon, 2013-01-14 07:50 |
2 |
3,684 |
by doranhen Mon, 2014-04-21 06:47 |
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FixBB design design_contrast by swoody » Tue, 2009-06-30 11:48 |
2 |
3,020 |
by swoody Mon, 2014-04-21 06:47 |
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fixbb design use by Lindsay » Fri, 2012-03-23 09:05 |
2 |
2,971 |
by Lindsay Mon, 2014-04-21 06:47 |
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
13 |
11,305 |
by jadolfbr Mon, 2014-04-21 06:47 |