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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic what is the xxx.static.linuxgccrelease?
by syoifczeri » Sat, 2015-10-31 04:09 		2
 6,266 by syoifczeri
Mon, 2015-11-02 03:59
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20 		7
 8,177 by rmoretti
Tue, 2015-10-27 09:11
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12 		1
 2,079 by rmoretti
Tue, 2015-10-27 08:46
Normal topic AtomPair and SPLINE
by attesor » Sat, 2015-06-20 11:42 		2
 3,971 by attesor
Thu, 2015-10-22 03:42
Normal topic The following options have been set but have not yet been used
by jrcf » Fri, 2015-10-09 10:48 		2
 3,953 by jrcf
Fri, 2015-10-16 10:57
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14 		2
 2,835 by gerdos
Fri, 2015-10-16 03:01
Normal topic About align hundreds of pdb structures produced by rosseta membrane abinitio
by ritacc18 » Wed, 2013-05-22 12:37 		5
 6,888 by ssrb
Tue, 2015-09-22 08:35
Normal topic Can't read constraint type
by allan.ferrari » Fri, 2015-08-28 12:33 		2
 2,979 by allan.ferrari
Mon, 2015-09-21 21:54
Normal topic Talaris scoring function
by Lindsay » Sun, 2014-08-24 18:16 		2
 6,516 by AndrewLeaver-Fay
Sun, 2015-09-20 19:34
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57 		4
 4,804 by cheyuk
Sun, 2015-09-20 02:08
Normal topic RNA add/modify residues
by galvaner » Fri, 2015-09-18 05:49 		1
 2,046 by rmoretti
Sat, 2015-09-19 13:20
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39 		3
 3,681 by rmoretti
Thu, 2015-09-17 12:42
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41 		2
 4,525 by rmoretti
Tue, 2015-09-08 10:18
Normal topic Moving Rosetta to C++11 standard
by smlewis » Wed, 2012-02-29 12:30 		1
 15,652 by rmoretti
Sat, 2015-09-05 12:10
Normal topic How to convert fragments to PDB format?
by JadAbbass » Wed, 2015-08-19 04:05 		1
 2,289 by rmoretti
Wed, 2015-09-02 12:48
Normal topic Another request for help with restarts
by jasnyderjr » Tue, 2015-08-18 12:14 		2
 3,064 by rmoretti
Tue, 2015-08-18 17:11
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45 		3
 5,125 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21 		3
 5,209 by Sandy
Fri, 2015-08-07 15:49
Normal topic How to recover out files when run crashs
by samuelrpita » Tue, 2015-07-28 12:54 		2
 3,129 by samuelrpita
Thu, 2015-08-06 14:23
Normal topic loop modeling
by bharat_46010 » Thu, 2015-08-06 01:34 		1
 2,074 by rmoretti
Thu, 2015-08-06 09:28
Normal topic Peptide building
by berk » Thu, 2015-07-30 06:53 		2
 3,087 by rmoretti
Thu, 2015-08-06 09:21
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27 		1
 2,799 by rmoretti
Tue, 2015-07-14 15:27
Normal topic Connecting 2 Domains Via Non-Flexible Linker
by jurkm » Mon, 2011-09-05 06:10 		2
 5,948 by kbuhr
Tue, 2015-07-14 04:30
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48 		3
 3,658 by rmoretti
Sun, 2015-07-05 14:28
Normal topic Chi values for side chains when switching from centroid mode
by MarkW » Fri, 2015-07-03 04:43 		2
 2,809 by MarkW
Fri, 2015-07-03 15:36
Normal topic modeling residues with covalent ligand attachments
by sid » Fri, 2011-04-15 09:16 		5
 8,097 by rmoretti
Fri, 2015-07-03 14:02
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25 		1
 2,068 by rmoretti
Fri, 2015-07-03 13:51
Closed topic protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19 		51
 62,263 by rmoretti
Fri, 2015-07-03 13:29
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28 		1
 3,280 by rmoretti
Fri, 2015-07-03 13:24
Normal topic the output of ligand docking
by phanvy » Fri, 2015-07-03 01:27 		1
 2,155 by rmoretti
Fri, 2015-07-03 13:14
Normal topic nbr_atom in ligand docking
by phanvy » Fri, 2015-07-03 07:40 		1
 2,482 by rmoretti
Fri, 2015-07-03 13:04
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
by sunlufinal » Mon, 2015-06-01 19:27 		1
 2,913 by rmoretti
Fri, 2015-07-03 12:58
Normal topic Clustering Rosetta output PDB files
by ritacc18 » Sat, 2014-01-11 20:13 		2
 5,827 by jwillis
Sat, 2015-06-27 21:11
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38 		1
 2,220 by rmoretti
Wed, 2015-06-17 12:43
Normal topic Re: Protein-RNA interface design
by bharat_46010 » Tue, 2015-04-07 04:44 		9
 9,379 by rmoretti
Mon, 2015-06-01 15:27
Normal topic How to generate symmdef file for translational symmetry only?
by pitmand » Thu, 2015-05-14 11:34 		2
 3,229 by pitmand
Tue, 2015-05-26 12:20
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07 		1
 2,364 by rmoretti
Mon, 2015-05-25 11:07
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32 		3
 3,562 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52 		5
 5,716 by rmoretti
Tue, 2015-05-05 14:31
Normal topic Change in binding energy after mutation in interface?
by cossio » Mon, 2014-12-01 06:27 		9
 11,688 by rmoretti
Thu, 2015-04-30 16:25
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07 		3
 3,973 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25 		1
 2,121 by rmoretti
Thu, 2015-04-30 07:13
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48 		5
 5,880 by rmoretti
Sat, 2015-04-25 10:05
Normal topic Anyone here knows what is the protocol capture archive???????!!
by MajorID » Thu, 2011-06-02 01:50 		12
 12,726 by rmoretti
Fri, 2015-04-24 12:15
Normal topic ​​B​3​-protein design using rosettaScript movers
by straore » Mon, 2015-03-16 05:05 		2
 2,953 by straore
Fri, 2015-04-17 01:54
Normal topic Unrecognized residue Glc
by cgautier » Tue, 2015-03-31 02:20 		5
 6,612 by rmoretti
Thu, 2015-04-16 10:09
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13 		1
 2,501 by rmoretti
Thu, 2015-04-02 12:52
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57 		3
 4,377 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Custom fold tree
by lah435 » Tue, 2015-03-03 12:02 		1
 2,156 by rmoretti
Mon, 2015-03-30 16:38
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48 		4
 5,057 by rmoretti
Mon, 2015-03-30 14:43
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56 		1
 2,504 by jadolfbr
Fri, 2015-02-27 11:08
Hot topic about constraints
by jiongzhang » Wed, 2011-02-23 15:59 		21
 25,292 by rmoretti
Wed, 2015-02-18 09:23
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44 		1
 2,199 by rmoretti
Wed, 2015-02-18 09:19
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48 		1
 2,288 by rmoretti
Wed, 2015-02-18 09:17
Normal topic metal_ions formal charge question
by lah435 » Tue, 2015-02-03 09:35 		2
 3,083 by lah435
Thu, 2015-02-12 09:16
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26 		10
 13,475 by lanselibai
Tue, 2015-02-10 14:03
Normal topic Robetta fragments and silent.out-file
by masterofpuppets » Wed, 2015-01-07 04:28 		5
 6,629 by masterofpuppets
Tue, 2015-02-10 03:15
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sun, 2012-06-17 14:04 		11
 13,030 by masterofpuppets
Tue, 2015-02-10 01:33
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05 		3
 4,603 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Change the number of residues on pdb file!
by phanvy » Tue, 2014-04-15 23:26 		3
 10,871 by rmoretti
Mon, 2015-02-09 09:09
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21 		4
 4,636 by jwillis
Sat, 2015-02-07 20:40
Normal topic Can anyone become a Rosetta developer?
by cossio » Thu, 2015-01-22 05:10 		4
 6,204 by cossio
Thu, 2015-01-29 11:50
Normal topic force field, energy function
by masterofpuppets » Wed, 2015-01-21 11:06 		3
 6,287 by masterofpuppets
Tue, 2015-01-27 07:07
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25 		2
 4,434 by rmoretti
Wed, 2015-01-21 10:05
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04 		7
 8,736 by rmoretti
Wed, 2015-01-21 08:43
Normal topic Problem with ClashCountCalculator
by masterofpuppets » Wed, 2015-01-07 04:47 		2
 2,846 by rmoretti
Fri, 2015-01-09 10:59
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53 		4
 4,760 by zaldini
Wed, 2015-01-07 20:35
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04 		4
 4,821 by rmoretti
Tue, 2015-01-06 09:58
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22 		4
 4,724 by zaldini
Fri, 2015-01-02 05:38
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52 		1
 3,392 by smlewis
Tue, 2014-12-23 13:58
Normal topic A question about Multiple constraints
by kxiao » Mon, 2014-06-16 07:02 		7
 7,564 by masterofpuppets
Fri, 2014-12-19 08:30
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13 		4
 4,977 by lanselibai
Tue, 2014-12-16 10:48
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55 		4
 6,292 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57 		0
 1,597 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54 		1
 2,411 by rmoretti
Mon, 2014-12-15 02:37
Normal topic How the Rosetta score (dG) is actually related to dH (enthalpy) and dS (entropy)?
by lanselibai » Thu, 2014-12-04 13:16 		4
 6,553 by lanselibai
Fri, 2014-12-12 10:27
Normal topic Fragment picker
by phanvy » Mon, 2014-12-08 04:25 		2
 3,406 by phanvy
Wed, 2014-12-10 00:17
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50 		4
 5,224 by cossio
Thu, 2014-12-04 05:41
Normal topic How to get the RMSD between two .pdb structures?
by cossio » Wed, 2014-12-03 05:33 		1
 3,580 by rmoretti
Wed, 2014-12-03 18:52
Normal topic What is "residue packing", "repacking", and so on?
by cossio » Wed, 2014-12-03 08:49 		2
 3,899 by cossio
Wed, 2014-12-03 14:51
Normal topic latest version of rosetta--unable to build models
by pramod » Mon, 2014-11-03 11:40 		10
 11,250 by jadolfbr
Wed, 2014-11-26 11:40
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33 		5
 5,431 by rmoretti
Tue, 2014-11-18 10:01
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44 		0
 1,583 by lanselibai
Sun, 2014-11-16 10:44
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51 		2
 2,978 by pachecoj
Tue, 2014-11-11 19:30
Normal topic minirosetta segmentation fault
by sabine » Wed, 2013-12-11 13:08 		13
 16,664 by rmoretti
Tue, 2014-11-11 13:56
Normal topic Get nchi for heavy atoms
by pachecoj » Tue, 2014-11-04 19:04 		1
 2,214 by rmoretti
Tue, 2014-11-11 13:22
Normal topic How to create a rotamer set that includes all possible rotamers of all possible amino acids
by AyushGoyal » Thu, 2014-11-06 10:37 		1
 2,535 by smlewis
Fri, 2014-11-07 12:03
Normal topic Plexpepdock with Zn
by phanvy » Wed, 2014-06-25 06:10 		1
 2,206 by rmoretti
Tue, 2014-11-04 10:35
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48 		3
 6,610 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Looking for a pdb....
by MarkW » Mon, 2014-10-13 15:45 		8
 8,556 by rmoretti
Mon, 2014-11-03 16:30
Normal topic Reproducing Robetta AB initio setup
by jason-rosetta » Sat, 2014-10-04 04:26 		1
 2,419 by jadolfbr
Fri, 2014-10-31 08:55
Normal topic input_score_filter not taken by program cluster ?
by Anonymous » Mon, 2012-06-11 09:14 		9
 9,435 by attesor
Fri, 2014-10-31 04:49
Normal topic cluster input_score_filter
by lj269 » Thu, 2011-09-01 15:29 		2
 3,147 by attesor
Fri, 2014-10-31 04:23
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23 		3
 4,276 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35 		2
 4,783 by phanvy
Thu, 2014-10-16 18:54
Normal topic Knowledge check on steric effects
by pachecoj » Thu, 2014-10-16 09:13 		1
 2,464 by rmoretti
Thu, 2014-10-16 10:33
Normal topic ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116
by phanvy » Wed, 2014-10-08 22:28 		2
 3,170 by phanvy
Wed, 2014-10-15 21:41
Normal topic Questions on energy oddities
by pachecoj » Wed, 2014-10-15 13:26 		2
 2,838 by pachecoj
Wed, 2014-10-15 15:12
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09 		9
 11,119 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Write PDB with multiple side-chain configurations
by pachecoj » Tue, 2014-09-30 21:42 		2
 3,132 by pachecoj
Thu, 2014-10-09 18:15