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Rosetta++ - General

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Sticky topic Sticky: READ ME FIRST
by rmoretti » Fri, 2015-09-04 15:23 		1
 4,223 by rmoretti
Tue, 2017-06-20 08:48
Normal topic question about antibody modeling and snugdock process option
by iojeong » Sun, 2023-04-16 19:18 		0
 616 by iojeong
Sun, 2023-04-16 19:18
Normal topic random seed
by kosa » Thu, 2008-05-08 03:11 		5
 9,078 by rmoretti
Tue, 2017-06-20 08:47
Normal topic Building a PDB from a set of internal coordinates.
by jcminerlanl » Mon, 2017-03-06 09:47 		2
 3,696 by rbhatta8
Tue, 2017-03-07 07:22
Normal topic disulfid bonds
by blaumbaer » Wed, 2008-04-30 10:21 		5
 7,928 by khorvash
Thu, 2017-01-19 15:05
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic FAQ
by admin » Mon, 2010-08-30 04:22 		0
 6,281 by admin
Sat, 2015-09-05 12:11
Normal topic How to prepare the pdblist file for docking_ensmble in Rosetta3.4
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic How does Rosetta calculate rms?
by rwn » Thu, 2008-05-15 07:41 		9
 18,018 by rmoretti
Tue, 2014-10-14 08:05
Normal topic Compiling Rosetta on Intel Macs running Leopard (OS X 10.5)
by pager2 » Tue, 2008-07-08 11:59 		5
 15,447 by rmoretti
Thu, 2014-06-05 11:17
Normal topic What's the difference between F and S labeled decoys?
by PaulaBanks » Mon, 2013-08-26 23:44 		1
 2,939 by rmoretti
Mon, 2014-04-21 06:48
Normal topic About the code.What's the difference between ****.fwd.hh and ****.hh
by Run » Sat, 2013-07-20 23:51 		2
 5,140 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Interpreting Clustering Results
by PaulaBanks » Sat, 2013-06-08 23:41 		2
 5,464 by rmoretti
Mon, 2014-04-21 06:48
Normal topic -no_filter flag in docking
by banshee » Tue, 2013-05-28 11:58 		2
 4,030 by banshee
Mon, 2014-04-21 06:47
Normal topic how to score a pdb in rosetta 2.3
by Lindsay » Tue, 2012-07-17 08:42 		1
 3,164 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to calc the fa_rep in rosetta2.x?
by tianbu » Tue, 2012-07-31 08:38 		1
 4,080 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does rosetta 3.3 have different energy terms from 2.3 (fixbb design)
by Lindsay » Mon, 2012-07-16 13:12 		4
 6,177 by smlewis
Mon, 2014-04-21 06:47
Normal topic the energy terms in fixbb
by tianbu » Sun, 2012-07-29 12:48 		4
 6,878 by tianbu
Mon, 2014-04-21 06:47
Normal topic Does any paper descript rosetta2.3's scoring function (fixbb )
by tianbu » Fri, 2012-07-27 14:50 		3
 5,244 by smlewis
Mon, 2014-04-21 06:47
Normal topic what is the F() in rosetta 2.3
by Lindsay » Fri, 2012-06-08 14:44 		1
 3,092 by smlewis
Mon, 2014-04-21 06:47
Normal topic difference between score and bk_tot
by Lindsay » Wed, 2012-05-23 21:25 		1
 3,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic AB INITIO WITH METALLOPROTEIN
by kaue » Sat, 2012-06-16 04:25 		2
 4,033 by kaue
Mon, 2014-04-21 06:47
Normal topic how to change the parameter weight in rosetta 2.3
by Lindsay » Tue, 2012-04-24 14:09 		3
 5,185 by Lindsay
Mon, 2014-04-21 06:47
Hot topic multigraft design
by spraha » Wed, 2012-01-11 07:57 		28
 36,046 by Sergey Menis
Mon, 2014-04-21 06:47
Normal topic Why should I do prepack before docking?
by ice_flame » Wed, 2011-11-16 04:12 		2
 4,187 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Can not build the parallel version of rosetta-2.3.1 (the SnugDock). Help!!
by ice_flame » Fri, 2011-11-11 07:53 		4
 5,711 by ice_flame
Mon, 2014-04-21 06:47
Normal topic How to model a protein that dimerizes to a small molecule?
This topic has been moved to "Rosetta 3 - General " (View topic)
Normal topic Dunbrack rotamer energy term...
by tsjain » Mon, 2011-06-13 15:19 		6
 11,581 by qlj
Mon, 2014-04-21 06:47
Normal topic Can Rosetta Antibody build a good model for a new sequence??
by ice_flame » Fri, 2011-04-22 17:56 		2
 5,742 by Sherpaman
Mon, 2014-04-21 06:47
Normal topic Re-building protocol crash
by murgantia » Sun, 2011-03-13 05:28 		0
 2,248 by murgantia
Mon, 2014-04-21 06:47
Normal topic Why a paralleled Rosetta perform like a normal one?
by ice_flame » Mon, 2011-03-28 22:23 		1
 4,756 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to build a parallel version of rosetta++ (Rosetta2.3.0) ?
by ice_flame » Fri, 2011-03-25 22:20 		0
 2,899 by ice_flame
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Mon, 2011-01-17 04:52 		1
 3,233 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody, Fv without terminal 3 residues
by yuich » Sun, 2010-09-26 21:07 		1
 3,616 by aroop
Mon, 2014-04-21 06:47
Normal topic run_prof.py
by joseph » Fri, 2010-11-05 14:38 		0
 2,283 by joseph
Mon, 2014-04-21 06:47
Normal topic make fragment
by joseph » Sun, 2010-10-31 21:16 		0
 2,356 by joseph
Mon, 2014-04-21 06:47
Normal topic Compiling Rosetta++ 3.1 with alternate gcc
by fyros » Thu, 2010-07-22 13:32 		1
 3,994 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta-2.3.0 build on MAC OSX 10.5.8
by joseph » Wed, 2010-09-08 10:26 		1
 5,038 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unrecognized Residues in RosettaDock
by mboggara » Sat, 2010-03-20 19:48 		0
 2,430 by mboggara
Mon, 2014-04-21 06:47
Normal topic /usr/bin/ld: cannot find -lmpi_cxx
by anusmita_sahoo » Fri, 2010-05-07 10:41 		2
 14,200 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic distributed computing environment support?
by jarod » Sat, 2010-03-13 21:05 		1
 3,381 by smlewis
Mon, 2014-04-21 06:47
Normal topic use of constraints
by anusmita_sahoo » Thu, 2010-06-10 10:54 		0
 2,267 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic some Q/A about SnugDock
by jarod » Fri, 2010-04-30 20:02 		0
 2,712 by jarod
Mon, 2014-04-21 06:47
Normal topic extract pdb file from silent file .out
by anusmita_sahoo » Sun, 2010-05-16 23:50 		1
 3,899 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic rosetta antibody model, the option -snug_fit
by jarod » Thu, 2010-04-01 18:30 		0
 2,555 by jarod
Mon, 2014-04-21 06:47
Normal topic build error by MS Visual studio 2008
by jarod » Fri, 2010-05-07 22:45 		1
 5,458 by jarod
Mon, 2014-04-21 06:47
Normal topic loop modeling with KIC mode
by wenchangyu2008 » Tue, 2010-03-02 06:05 		2
 4,774 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic compilation failure in 64-bit mode linux system
by kw8cr » Wed, 2010-02-24 22:21 		1
 4,391 by zdn3023
Mon, 2014-04-21 06:47
Normal topic Using dipolar coupling restraints in Rosetta v2.3
by pager2 » Mon, 2010-03-08 14:54 		0
 2,634 by pager2
Mon, 2014-04-21 06:47
Normal topic Rosetta stops while generating decoys
by jjan » Wed, 2010-01-13 00:45 		0
 2,289 by jjan
Mon, 2014-04-21 06:47
Normal topic Why so wried way?
by dikov » Fri, 2010-03-05 04:57 		0
 2,713 by dikov
Mon, 2014-04-21 06:47
Normal topic Can Rosetta generate proteins with sidechains ?
by wszjzhang » Thu, 2010-01-07 13:08 		0
 2,274 by wszjzhang
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Wed, 2009-10-14 04:46 		1
 3,208 by brspurri
Mon, 2014-04-21 06:47
Normal topic -regions
by mdyini » Wed, 2009-11-25 15:35 		0
 2,194 by mdyini
Mon, 2014-04-21 06:47
Normal topic terminus capping
by mbellows » Wed, 2009-10-07 11:16 		1
 3,817 by mboggara
Mon, 2014-04-21 06:47
Normal topic what's the meaning of the Ab-Ag Dock with RosettaDock
by huairpan » Thu, 2009-10-15 23:26 		2
 4,524 by huairpan
Mon, 2014-04-21 06:47
Normal topic sequence variability in rosetta design
by sdh » Thu, 2009-10-15 03:44 		1
 3,142 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3 - docking_protocol - fold_tree and number of residues problem
by dsept » Sat, 2009-09-05 11:32 		4
 7,496 by sid
Mon, 2014-04-21 06:47
Normal topic BLOUSE62
by AndrewBworth » Tue, 2009-06-16 13:32 		1
 3,197 by vanita
Mon, 2014-04-21 06:47
Normal topic To add/include unusual amino acids in RosettaDesign
by shirleyzheng » Mon, 2009-07-06 09:34 		0
 2,242 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic ligand dock residue selection
by Silice » Mon, 2009-08-03 07:54 		1
 3,061 by Silice
Mon, 2014-04-21 06:47
Normal topic producing good idealized structures
by lesi » Thu, 2009-06-18 15:06 		3
 5,309 by sid
Mon, 2014-04-21 06:47
Normal topic resemble docking use rosettadock found rms=0 in output
by lqzhang » Sun, 2009-07-19 06:01 		1
 3,184 by lqzhang
Mon, 2014-04-21 06:47
Normal topic Problems in installing Rosetta3 in Red Hat Linux
by jjz2009 » Fri, 2009-08-21 08:21 		1
 3,180 by jjz2009
Mon, 2014-04-21 06:47
Normal topic Subclusters - what are they?
by Bob3k » Mon, 2009-06-15 05:58 		0
 2,401 by Bob3k
Mon, 2014-04-21 06:47
Normal topic pose_ligand_docking? and constraint file...
by mdyini » Wed, 2009-07-01 20:13 		0
 2,280 by mdyini
Mon, 2014-04-21 06:47
Normal topic Scoring Weights
by AndrewBworth » Tue, 2009-07-28 18:08 		1
 3,411 by momeara
Mon, 2014-04-21 06:47
Normal topic flexible backbone design with multiple chains
by lesi » Thu, 2009-06-18 14:57 		2
 4,561 by lqzhang
Mon, 2014-04-21 06:47
Normal topic symmetric design in rosetta3
by sdh » Wed, 2009-07-08 07:30 		1
 3,272 by smlewis
Mon, 2014-04-21 06:47
Normal topic de novo modeling of a dimer
by kosa » Wed, 2009-08-19 05:55 		1
 3,478 by yangshen
Mon, 2014-04-21 06:47
Normal topic Questions about -fix_natsc and -trim
by mdyini » Thu, 2009-06-11 13:27 		0
 2,193 by mdyini
Mon, 2014-04-21 06:47
Normal topic Re orienting files from the PDB.
by AndrewBworth » Thu, 2009-06-25 19:09 		1
 3,065 by vanita
Mon, 2014-04-21 06:47
Normal topic comparing 2 docking sites : howto ?
by lcavallo » Mon, 2009-07-27 13:38 		1
 3,160 by sid
Mon, 2014-04-21 06:47
Normal topic make_fragments
by ctaylor » Mon, 2009-09-21 12:42 		4
 6,153 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cluster is down..
by AndrewBworth » Wed, 2009-06-17 10:10 		1
 3,070 by vanita
Mon, 2014-04-21 06:47
Normal topic cluster_info_silent.out GLIB problem
by Jungi » Wed, 2009-07-08 01:35 		1
 3,200 by Jungi
Mon, 2014-04-21 06:47
Normal topic Pose Docking
by AndrewBworth » Sat, 2009-08-08 12:50 		2
 4,364 by matchf
Mon, 2014-04-21 06:47
Normal topic fragments library for starting structures having multiple chains
by mdyini » Thu, 2009-06-11 10:34 		1
 3,391 by mdyini
Mon, 2014-04-21 06:47
Normal topic Piecing together multiple domains
by AndrewBworth » Mon, 2009-06-22 14:24 		1
 3,177 by vanita
Mon, 2014-04-21 06:47
Normal topic Is it possible to score interface in -score mode? **Solved**
by maperalta » Thu, 2009-07-23 10:29 		1
 3,768 by maperalta
Mon, 2014-04-21 06:47
Normal topic cluster.pl fails to extract best centers
by rmosca » Tue, 2008-12-02 03:10 		1
 2,821 by yiliu
Mon, 2014-04-21 06:47
Normal topic Compiling Mpilan option
by TiagoGomes » Tue, 2009-04-21 05:34 		0
 2,039 by TiagoGomes
Mon, 2014-04-21 06:47
Normal topic icc versus gcc and 64bit versus 32bit performances
by lcavallo » Fri, 2009-02-20 15:29 		0
 1,992 by lcavallo
Mon, 2014-04-21 06:47
Normal topic How to set gcc optimization level with scons to compile 64bit rosetta-2.3.0
by hazards » Fri, 2009-05-15 14:16 		0
 3,938 by hazards
Mon, 2014-04-21 06:47
Normal topic Getting the scorefilter value from a calibration run
by lcavallo » Fri, 2009-03-20 06:18 		0
 2,031 by lcavallo
Mon, 2014-04-21 06:47
Normal topic To apply distance constraint to MULTIPLE residue pairs, what's the format?
by shirleyzheng » Mon, 2009-04-06 10:24 		8
 11,585 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Build Problem on 64 bit Gentoo
by spetzjoe » Thu, 2008-11-20 12:24 		3
 5,173 by dberkholz
Mon, 2014-04-21 06:47
Normal topic disulphides are only sometimes formed
by danzinho » Mon, 2009-01-19 08:42 		1
 2,794 by yiliu
Mon, 2014-04-21 06:47
Normal topic rosetta3 compliation
by sdh » Mon, 2009-05-04 03:16 		0
 1,956 by sdh
Mon, 2014-04-21 06:47
Normal topic problems building rosetta 2.3.0 with icc
by lcavallo » Wed, 2009-03-04 05:32 		0
 2,264 by lcavallo
Mon, 2014-04-21 06:47
Normal topic Docking with pose_loops - frustration!
by mchldln » Wed, 2009-06-10 08:44 		2
 3,751 by mchldln
Mon, 2014-04-21 06:47
Normal topic test.fasta and test.dat files are not available in Rosetta2.3.0
by suj88 » Mon, 2009-03-23 17:14 		1
 2,979 by yiliu
Mon, 2014-04-21 06:47
Normal topic Fragment files for incomplet protein
by globalcoco » Sat, 2009-04-18 05:16 		1
 2,901 by vanita
Mon, 2014-04-21 06:47
Normal topic Ab Initio
by vamsi » Fri, 2008-11-21 12:42 		2
 3,890 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta doesn't read the starting structure - solved
by Bob3k » Fri, 2009-02-06 02:00 		4
 6,874 by Bob3k
Mon, 2014-04-21 06:47
Normal topic RosettaDesign (each run produces the same sequence with many GLY residues )
by shirleyzheng » Wed, 2009-05-13 10:25 		4
 6,449 by shirleyzheng
Mon, 2014-04-21 06:47
Normal topic Prepacking structures using RosettaDock on a Windows platform
by suj88 » Fri, 2009-03-13 14:20 		1
 4,048 by suj88
Mon, 2014-04-21 06:47
Normal topic Which vall version are make_fragment based on?
by lennylv » Thu, 2009-04-02 05:00 		0
 2,076 by lennylv
Mon, 2014-04-21 06:47
Normal topic Help with flexible backbone design
by neilcifer » Thu, 2008-11-20 10:45 		0
 2,002 by neilcifer
Mon, 2014-04-21 06:47
Normal topic modelling loops and inserted domains
by danzinho » Fri, 2009-01-16 02:14 		6
 7,964 by wenchangyu2008
Mon, 2014-04-21 06:47