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ROSIE - General
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ROSIE FAQ by Sergey » Mon, 2013-04-08 10:41 |
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31,266 |
by rmoretti Thu, 2024-06-20 11:15 |
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Correctly Formatting a PDB file for analysis of a Zinc Finger Motif by rslack » Thu, 2022-04-28 18:19 |
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685 |
by rslack Thu, 2022-04-28 18:38 |
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Relax application before ROSIE by mwinn99 » Wed, 2022-05-25 13:23 |
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682 |
by mwinn99 Wed, 2022-05-25 13:23 |
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Ways to improve ROSIE docking2 jobs by AdoCbl » Wed, 2015-09-23 15:12 |
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1,875 |
by AdoCbl Wed, 2015-09-23 15:12 |
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my status jobs been queued in such longer time by Atirah » Fri, 2020-04-10 02:55 |
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1,666 |
by Atirah Fri, 2020-04-10 02:57 |
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Extracting starting coordinates from ligand docking output by rgb6@le.ac.uk » Wed, 2023-03-08 02:03 |
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676 |
by rgb6@le.ac.uk Wed, 2023-03-08 02:03 |
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m6A modification on FARFAR2 by uke » Mon, 2023-09-18 04:31 |
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541 |
by uke Mon, 2023-09-18 04:31 |
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Cancel / delete Rosie not working by fglaser » Tue, 2015-07-07 01:14 |
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1,990 |
by fglaser Tue, 2015-07-07 01:14 |
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Transitioning from ROSIE to Rosetta by AdoCbl » Wed, 2015-09-23 11:49 |
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1,943 |
by AdoCbl Wed, 2015-09-23 11:49 |
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antibody-antigen interface score by jessye » Sun, 2018-07-01 21:12 |
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1,671 |
by jessye Sun, 2018-07-01 21:12 |
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ROSIE ANTIBODY GRAFTING by izzafajriani » Sat, 2023-02-25 01:28 |
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600 |
by izzafajriani Sat, 2023-02-25 01:28 |
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Symmetric Docking Protocol by Sergey » Tue, 2013-10-29 17:33 |
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5,684 |
by Sergey Mon, 2014-04-21 06:48 |
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getting right protonation state from PKa of Rosie by hajar » Fri, 2020-07-24 16:24 |
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1,284 |
by hajar Fri, 2020-07-24 16:24 |
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Academic email verification by Yair Tenorio » Mon, 2023-10-23 12:18 |
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493 |
by Yair Tenorio Mon, 2023-10-23 12:18 |
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Ways to improve both docking2 and symmetric_docking jobs by AdoCbl » Wed, 2015-09-23 14:43 |
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2,020 |
by AdoCbl Wed, 2015-09-23 15:35 |
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Erraser single-residue protocol now open to public by Sergey » Thu, 2012-10-25 18:21 |
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2,312 |
by Sergey Mon, 2014-04-21 06:47 |
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Ligand Docking Protocol now available for academic users by Sergey » Sat, 2014-05-10 14:39 |
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2,431 |
by Sergey Sat, 2014-05-10 14:39 |
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Verification by davelansing » Wed, 2023-07-05 12:09 |
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364 |
by davelansing Wed, 2023-07-05 12:10 |
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FARFAR2 - Extra Minimize Hangs on Submittal by jvogt » Thu, 2022-06-16 09:41 |
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696 |
by jvogt Thu, 2022-06-16 09:41 |
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problem in downloading result from backrub server by ladimafakher » Sun, 2018-07-01 00:50 |
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1,447 |
by ladimafakher Sun, 2018-07-01 00:50 |
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Rosetta processes crashed by izzafajriani » Thu, 2023-02-23 15:35 |
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639 |
by izzafajriani Thu, 2023-02-23 15:35 |
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Questions about SnugDock result analysis by LTJ » Thu, 2020-07-02 17:41 |
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1,442 |
by LTJ Thu, 2020-07-02 17:41 |
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Ligand Binding by KS Siddiqui » Thu, 2019-04-25 01:01 |
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1,437 |
by KS Siddiqui Thu, 2019-04-25 01:01 |
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Rosetta-Vienna RNP-ddG failed by Athena Chu » Mon, 2022-04-18 18:21 |
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685 |
by Athena Chu Mon, 2022-04-18 18:21 |
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Running ROSIE from terminal by sc19 » Thu, 2022-07-14 01:09 |
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611 |
by sc19 Thu, 2022-07-14 01:09 |
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Erraser protocol now open to public by Sergey » Wed, 2012-10-17 12:38 |
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2,369 |
by Sergey Mon, 2014-04-21 06:47 |
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ROSETTA design affinity optimization by wentlewi » Mon, 2020-02-03 01:42 |
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1,756 |
by wentlewi Mon, 2020-02-03 01:42 |
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pKa app is now public! by Sergey » Mon, 2014-03-10 15:47 |
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3,883 |
by Sergey Mon, 2014-03-10 15:47 |
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Results are NOT emailed by alsayeghkn » Wed, 2022-03-23 08:55 |
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646 |
by alsayeghkn Wed, 2022-03-23 08:55 |
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I have jobs queued for nearly 1 month by jessye » Thu, 2019-10-10 03:36 |
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1,520 |
by jessye Thu, 2019-10-10 03:36 |
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ROSIE pKa calculation issue by lijum » Mon, 2020-06-15 12:12 |
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1,391 |
by lijum Mon, 2020-06-15 12:12 |
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Problem with ROSIE antibody modeling by wildchipiron » Thu, 2016-04-14 20:00 |
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1,979 |
by wildchipiron Thu, 2016-04-14 20:00 |
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Multiple antibody jobs failed by larae » Mon, 2022-09-12 09:54 |
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612 |
by larae Mon, 2022-09-12 09:54 |
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Sequence Tolerance broken links? by dnamkr » Fri, 2021-10-22 11:34 |
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837 |
by dnamkr Fri, 2021-10-22 11:34 |
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Rosettadock Error by jinfeng » Fri, 2022-11-18 20:39 |
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876 |
by jinfeng Fri, 2022-11-18 20:39 |
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account does not have verified academic email address by haria256 » Sat, 2022-07-02 03:33 |
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672 |
by haria256 Sat, 2022-07-02 03:33 |
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farfar2 failed by Kamonwan » Mon, 2023-01-23 18:41 |
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641 |
by Kamonwan Mon, 2023-01-23 18:41 |
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Antibody Job Failed by aquilesms89 » Thu, 2020-08-13 08:50 |
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1,549 |
by aquilesms89 Thu, 2020-08-13 08:50 |
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SnugDocking result interpretation by jessye » Mon, 2019-05-27 03:43 |
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2,101 |
by jeliazkov Tue, 2019-05-28 13:36 |
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Academic verification by AnaFernandes-CTN » Tue, 2023-05-30 08:57 |
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602 |
by Sergey Tue, 2023-05-30 11:32 |
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missing residues while Rosie Modeling by jguan » Mon, 2014-08-11 06:56 |
1 |
4,541 |
by jadolfbr Tue, 2014-10-21 08:46 |
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Support for local install of ROSIE? by jjv5 » Mon, 2022-03-21 08:58 |
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973 |
by Sergey Mon, 2022-03-21 12:10 |
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FARFAR2 structure prediction give a circular RNA by jitz » Thu, 2019-07-25 04:58 |
1 |
2,278 |
by everyday847 Mon, 2019-11-11 14:39 |
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email verification of rosie via github by tenbaegger » Wed, 2024-01-17 17:31 |
1 |
361 |
by Sergey Mon, 2024-01-22 13:42 |
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Prepack step fail in docking2 by gretahultqvist » Thu, 2015-06-11 00:20 |
1 |
3,311 |
by rmoretti Fri, 2015-07-03 12:14 |
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Academic email verification by KN » Thu, 2024-02-29 00:53 |
1 |
269 |
by Sergey Thu, 2024-02-29 09:15 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:46 |
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2,315 |
by rmoretti Mon, 2017-07-17 07:57 |
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SnugDock: chain_id H represents more than one chain by tweetman » Wed, 2018-05-02 04:24 |
1 |
2,892 |
by sheehajh Wed, 2018-05-02 06:38 |
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Beta-Peptide Design Protocol now available for academic users by Sergey » Wed, 2012-11-28 12:32 |
1 |
7,986 |
by jaw315 Thu, 2022-06-09 10:26 |
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Academic email by CeciliaGG » Tue, 2024-04-02 13:17 |
1 |
271 |
by rmoretti Mon, 2024-04-29 10:10 |
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Snugdock versus Docking with an ensemble of protein conformations by MIke Kent » Fri, 2019-03-29 10:07 |
1 |
2,148 |
by jeliazkov Fri, 2019-03-29 10:34 |
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Docking two proteins with interfacing ligand by luisalles » Tue, 2016-04-05 23:56 |
1 |
2,922 |
by rmoretti Fri, 2016-04-29 09:27 |
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Academic Email by Teo » Tue, 2022-09-06 08:42 |
1 |
1,063 |
by Sergey Tue, 2022-09-06 11:10 |
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farfar2 error by debostuti » Thu, 2021-10-07 23:10 |
1 |
1,292 |
by everyday847 Fri, 2021-10-08 10:29 |
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Rosie vip function fails on multiple tries by Amy F » Sat, 2019-06-15 12:51 |
1 |
1,988 |
by rmoretti Mon, 2019-06-24 12:20 |
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Academic email address verification by whu » Thu, 2023-07-06 09:29 |
1 |
557 |
by Sergey Fri, 2023-07-07 10:41 |
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Academic email verification by dianahinojosa » Fri, 2023-10-27 19:17 |
1 |
433 |
by Sergey Mon, 2023-10-30 11:48 |
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Rosetta Antibody by Maryam_tabasinezhad » Sun, 2016-08-28 00:29 |
1 |
2,865 |
by smlewis Sun, 2016-08-28 12:04 |
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Academic address not verified during Rosie login by Jean-Etienne » Thu, 2022-10-06 22:49 |
1 |
855 |
by Sergey Fri, 2022-10-07 15:26 |
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Academic domain not listed by SKlab » Fri, 2022-05-20 12:03 |
1 |
928 |
by Sergey Fri, 2022-05-20 12:14 |
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Error of non standard amino acid (SnugDock) by bt13d072 » Wed, 2017-03-01 19:51 |
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2,913 |
by rmoretti Mon, 2017-03-06 09:14 |
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Antibody scoring by larae » Wed, 2022-06-22 11:14 |
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953 |
by rmoretti Wed, 2022-06-22 12:00 |
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Compaing interface socre of different ligands with the same protein structure by Caulobacter » Tue, 2019-12-10 12:53 |
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1,968 |
by rmoretti Tue, 2019-12-10 13:10 |
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Academic email recognition by SamyC » Fri, 2024-03-15 08:57 |
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288 |
by Sergey Tue, 2024-03-19 11:30 |
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Modeling Antibody Structure failed by Sunyp_IM » Sun, 2017-08-06 02:59 |
1 |
2,660 |
by rmoretti Mon, 2017-08-14 15:09 |
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GitHub authentication for Rosie by ivmolle » Thu, 2023-01-19 00:21 |
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732 |
by Sergey Thu, 2023-01-19 13:33 |
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"in_progress" decoy files in some docking2 local_docking job tar archives by AdoCbl » Sun, 2015-10-18 13:47 |
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3,006 |
by rmoretti Sun, 2015-10-18 13:59 |
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Academic email by ruuua » Wed, 2022-08-03 01:45 |
1 |
987 |
by Sergey Thu, 2022-08-04 15:58 |
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error in peptiderive job result by PRITAM » Wed, 2019-05-08 09:33 |
1 |
2,016 |
by rmoretti Mon, 2019-06-24 12:30 |
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academic verification by Rita Melo » Fri, 2023-05-26 07:36 |
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592 |
by Sergey Tue, 2023-05-30 11:31 |
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Log in to rosie by dnamkr » Tue, 2022-03-15 11:04 |
1 |
1,086 |
by Sergey Tue, 2022-03-15 11:28 |
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antibody modeling fail by jessye » Tue, 2019-07-02 01:57 |
1 |
2,092 |
by rmoretti Wed, 2019-07-10 09:09 |
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Verification via github by Mirosh » Wed, 2023-08-30 21:15 |
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483 |
by rmoretti Thu, 2023-08-31 08:50 |
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Academic email verification by ssrn » Tue, 2023-12-12 05:14 |
1 |
393 |
by Sergey Tue, 2023-12-12 10:52 |
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Academic domain not listed by benjv » Wed, 2022-05-25 10:31 |
1 |
959 |
by Sergey Thu, 2022-05-26 10:23 |
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I am a PhD student in biochemistry at the Institute of Biochemistry and Biophysics (IBB) in Tehran, Iran, but my GitHub accou by mrabolhasan » Mon, 2024-02-19 22:41 |
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306 |
by rmoretti Tue, 2024-02-20 06:54 |
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academic email by kbartholomeeusen » Fri, 2024-03-29 07:39 |
1 |
206 |
by Sergey Fri, 2024-03-29 16:59 |
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Login using GitHub by nicotomasini » Mon, 2023-01-30 09:14 |
1 |
783 |
by Sergey Mon, 2023-01-30 12:32 |
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Verification of Academic Email by jade » Thu, 2024-06-06 05:23 |
1 |
99 |
by Sergey Sun, 2024-06-09 11:19 |
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Small molecule ligand docking in RosettaDock-4.0 by hicks139 » Thu, 2023-03-02 09:35 |
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869 |
by rmoretti Thu, 2023-03-02 09:37 |
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Docking results by sujigeorge1979 » Wed, 2019-06-12 23:40 |
1 |
2,101 |
by jeliazkov Mon, 2019-06-17 06:07 |
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Academic email verification by rpracella » Wed, 2023-10-25 23:39 |
1 |
421 |
by Sergey Thu, 2023-10-26 14:27 |
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chothia numbering error of FR_L1 by Sbrendle » Mon, 2016-08-22 06:58 |
1 |
2,622 |
by nmarze Mon, 2016-08-22 11:57 |
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Academic E-mail address by Valery Veresov » Wed, 2022-10-05 05:43 |
1 |
855 |
by rmoretti Thu, 2022-10-06 09:18 |
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Antibody job failed by larae » Fri, 2022-03-25 11:04 |
1 |
979 |
by rmoretti Tue, 2022-03-29 15:14 |
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academic institution domain is not listed by minzhi » Mon, 2022-05-16 14:26 |
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982 |
by Sergey Wed, 2022-05-18 14:05 |
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Academic Email Verification by charbel.raad@ra... » Tue, 2024-01-30 05:05 |
1 |
334 |
by Sergey Tue, 2024-01-30 11:04 |
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RMSD - Score by LT » Thu, 2017-02-23 12:59 |
1 |
2,825 |
by rmoretti Thu, 2017-02-23 13:03 |
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Academic Email Adress by Konstantin » Sat, 2022-11-12 02:06 |
1 |
905 |
by rmoretti Mon, 2022-11-14 07:21 |
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academic email verification by SamyC » Fri, 2024-03-08 08:30 |
1 |
289 |
by SamyC Sat, 2024-03-09 01:56 |
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Access to Rosie via GitHub Authentication by Prizrak5 » Thu, 2023-01-05 01:38 |
1 |
835 |
by Sergey Thu, 2023-01-05 14:26 |
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RMSD values for symmetric_docking clockwise vs counterclockwise cyclical outputs by AdoCbl » Sun, 2015-10-18 12:49 |
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2,933 |
by IAndre Mon, 2015-10-19 01:19 |
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Academic email by Timothius » Sun, 2022-07-24 15:51 |
1 |
915 |
by Sergey Thu, 2022-07-28 14:28 |
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Cannot confirm registration to the Rosie site by fglaser » Sun, 2013-10-13 02:52 |
1 |
9,864 |
by Sergey Mon, 2014-04-21 06:48 |
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Please add academic email by mglgc » Tue, 2024-04-23 10:24 |
1 |
213 |
by Sergey Tue, 2024-04-23 12:00 |
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Academic email verification by john2 » Tue, 2023-10-17 11:41 |
1 |
430 |
by Sergey Tue, 2023-10-17 13:13 |
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Problem in refinement job in Docking2 by aninditaseal » Fri, 2016-04-22 07:12 |
1 |
2,648 |
by Sergey Fri, 2016-04-22 11:13 |
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academic_address by Natalia » Fri, 2022-09-16 12:27 |
1 |
805 |
by rmoretti Fri, 2022-09-16 13:50 |
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ddG_RNA final energy different when modeling WT sequence by AlexLukasiewicz » Tue, 2022-01-25 14:41 |
1 |
1,093 |
by Ajlukasiewicz Fri, 2022-09-09 12:24 |
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RMSD by jessye » Tue, 2019-07-02 01:54 |
1 |
2,755 |
by rmoretti Tue, 2019-07-09 09:49 |