The problem has been solved
Hello everyone!
I constructed phi/psi plot using only rama energy term and noticed a strange thing (attached file). In a place where the angle accepts value 0 score function gives minimum value. Example with alanine chain:
pose1.set_phi(4, 10);
HI,
Is there an option to suppress the printing to STDOUT for applications? Specifically, I'd like to run fixbb and the score app silently in Rosetta 3.5.
Thanks
Hi to everyone!
I have a complex: protein and peptide (AB chains). I need to make small random shifts of peptide. I do it so
numeric::Real step_size(1.0);
core::kinematics::Jump flexible_jump = pose.jump(pose.num_jump());
flexible_jump.random_trans(step_size);
pose.set_jump( pose.num_jump(), flexible_jump );
hey all,
Sorry if this is previously solved but I have not seen this anything like this before with limited help on google so I don't even know where to start. I've just bought a new computer and installed ubuntu 15.10 (newest versions maybe this is the problem?). I've installed rosetta several times on other systems not running 15.10. these are my steps.
install appropriate lib that are not on my computer is libz (i didn't see an error saying it was missing a lib)
install scons
Dear Rosetta user's,
Hi,
I'm interested in understanding how the fixbb application works. It mentions in the documentation page:
https://www.rosettacommons.org/manuals/archive/rosetta3.5_user_guide/d4/d68/fixbb.html
a stochastic simulated annealing approach is used. However, I do not see a description of this approach in the references on that page.
I did find a reference to a Metropolis Monte Carol procedure here:
Hello guys.
1) I am running the protocol for comparative modeling, and run the program it tells not find some flags. The question is, is this common? It will really interfere too much in my final result?
2) what the function of this sequence, after calling the program? (@flags >& test.log &)
Thank you
Dear Rosetta Users:
I recently installed Rosetta 3.5 onto a linux box. There are two different building packages distributed online. One is "Rosetta source" and the other one is "Rosetta source + binaries for linux". I downloaded the latter one and complied it successfully followed the instructions. But I am just wondering if I ever need to compile it if it came with binaries. Thank you very much!
Regards,
Zuodong
Hello everyone,
I am running Abinitio protocol with some experimental constraints and I have encountered the following message in the log file:
core.scoring.constraints.util: (2) Constraint choice: {file name}
core.scoring.constraints.ConstraintsIO: (2) read constraints from {file name}
core.scoring.constraints.ConstraintsIO: (2) can't read constraint type
core.scoring.constraints.ConstraintsIO: (2) Read in {n} constraints