Building terminated because of errors,anyone can help me?
Submitted by Gu on Fri, 2018-09-21 01:16
Category:
Compilation
the building terminate because of errors,the output is:
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Building problem from a beginner,anyone can help me?
Submitted by Gu on Wed, 2018-09-19 09:38
Category:
Compilation
hello, every superiors I have a building problem for rosetta3.9,when i input : >./scons.py -j 4 mode=release bin,the ouput is: -j: command not found
how can i fix this problem? my system is Linux(Ubantu) Thank you for everyone!
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pyrosetta source
Submitted by scdantu on Mon, 2018-09-17 08:02
Category:
Compilation
PyRosetta
Hi,
I have GLIBC issue with the compiled PyRosetta4.Release.python35.linux.release-191 on a Suse Linux cluster. So I would like to compile it from the source but I cannot find the download link and cannot download it from github using my login details. Kindly suggest the link to download the source code for PyRosetta4.
Regards,
Sarath
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Iterative local rebuilding vs automated structure refinement
Submitted by ahmadkhalifa on Fri, 2018-09-14 07:44
Category:
Structure prediction
I've been using the iterative local rebuilding approach based on this tutorial:
In a recent publication titled "Automated structure refinement of macromolecular assemblies from cryo-EM maps using Rosetta", the following was mentioned:
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Fluctuations in I_sc
Submitted by eminegenetics on Thu, 2018-09-13 12:07
Category:
Docking
Hello,
I am using "local refinement" to calculate the I_sc of protein complexes. When I ran Rosetta for the exact same structure multiple times and I got a significant fluctuation in I_SC score, ranging from -2 to -15. This means that in one trial, the complex is unfavorable, but it is favorable in the subsequent trial. What is the reason for this? How can I overcome it?
Thank you in advance,
Emine
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Question on Designing with NCAAs
Submitted by salvatta on Mon, 2018-09-10 10:09
Category:
Non-Canonical Peptides
Hi, I'd like to include some NCAAs in my peptide design. I can use a resfile in which I disallow the canonicals and write NC to allow for unnatural residues:
EMPTY NC
start
However, if I want to allow certain NCAAs, how can I know the 3-letter code that corresponds to each NCAA??
Thanks!!
Salva
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KIC with fragments versus Next generation KIC
Submitted by Loki01 on Fri, 2018-09-07 05:06
Category:
Structure prediction
Dear all,
I wanted to pick your brains. I am using KIC with fragments to modell a loop. I am under the impression that this protocol outperfromrs the next generation KIC. Could you confirm this for me and perhap refer me to the relevant paper? Is the KIC with fragment protocol better?
Alternatively, can I use the KIC with fragments protocol with the flags from next generation KIC?
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RosettaCM hybridize mover error after fragment picking
Submitted by amorin on Thu, 2018-09-06 11:03
Category:
Structure prediction
Hi all,
I am trying to do some comparitive modeling with RosettaCM by folowing the instructions here https://www.rosettacommons.org/docs/latest/application_documentation/structure_prediction/RosettaCM
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structure prediction
Submitted by MA on Wed, 2018-09-05 00:50
Category:
Structure prediction
Dear everyone,
How much is parameter " -abinitio::increase_cycles " in abinitio structure prediction.
Thanks.
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Is CST_Design required for enzdes protocol?
Submitted by dasdevashishdas on Mon, 2018-09-03 00:51
Category:
Enzyme Design
Dear Rosetta team,
I wanted to know if cst-design is required for Enzyme Design protocol?
my flags
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