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Import error undefined symbol and Anaconda python

Submitted by ahmadkhalifa on Tue, 2017-11-07 10:49
Category: 
PyRosetta

I have a few questions regarding Pyrosetta 4:

First I have Anaconda2 which comes with python installed at /home/MYUSERNAME/anaconda2/bin/python, however the installation uses the default python at /usr/bin/python and its site packages directory in  /usr/lib/python2.7/site-packages.

1) How can I uninstall pyrosetta?

2) How can I install it for the Anaconda python?

 

Second, running native python, trying >>> from rosetta import * gives:

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Unsolved
Forums: 
PyRosetta - Build/Install

rosetta.core.pack.pack_rotamers_setup(pose, score_fxn, task_design, rotsets) not working

Submitted by tschiex on Sun, 2017-11-05 08:29
Category: 
Design

Dear all,

I have recently upgraded to the newest PyRosetta version (156) because my machine was upgraded to Unbuntu Artful, that uses Python 3.6 (and 144 was compiled for 3.5).

My packing script worked fine in the previous PyRosetta version I used (144) but now fails on rosetta.core.pack.pack_rotamers_setup with the following message.

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PyRosetta - General

How to make a resfile

Submitted by dflaher on Fri, 2017-11-03 10:26
Category: 
Docking

Hello,

I am new to using Rosetta. I would like to make a res file to mutate through all 20 amino acids in a Protein-protein interface and predict binding energy using RosettaDesign.  This might be a stupid question but how to you make a resfile? Do you write it in text edit? Is the file extention .res?

I have found the refile syntax page from Rosettas website but it does not say where you type any of the commands into or how to save it.

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Forums: 
Rosetta 3 - General

errors during test rosetta_2017.39.59729

Submitted by Jacky010 on Mon, 2017-10-30 23:01
Category: 
Compilation

I have compiled the newest version of rosetta3 in centos7 without any problem. After installation, I was testing the rosetta. Some errors occur. Could any one give me some suggestions?

Thank you for taking your time.

I have attached the test.log below.

 

 

 

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Forums: 
Rosetta 3 - Build/Install

[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?

Submitted by ipetrik_ambry on Mon, 2017-10-30 17:03
Category: 
Scoring

Hey,

Can anyone point me to good examples of implmentations for setup_for_packing and prepare_rotamers_for_packing (and I guess update_residue_for_packing while I'm at it)? I'm not entirely sure I understand what the arguments are for these methods and the use case for when I would want to implement these methods.

Thanks in advance!

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Forums: 
Rosetta 3 - General

[dev] determine which score_type's enabled in create_energy_method?

Submitted by ipetrik_ambry on Fri, 2017-10-27 15:37
Category: 
Scoring

Hey,

I have created an energy method and it works. However, I want to do a check at the time it is created for whether a particular score_type is enabled. Is there any way to know which score_types are enabled from within my create_energy_method function?

Thanks!

- Igor

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Forums: 
Rosetta 3 - General

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