The problem hasn't been solved
Hello everyone,
I'm new here. I'm want to install and run rosetta. First I want to ask about the difference between Rosetta 2017.36 source + binaries for Linux and Rosetta 2017.36 source .
I am trying to replicate the work of the paper: http://www.nature.com/nature/journal/vaop/ncurrent/full/nature23912.html?foxtrotcallback=true
It seems the Rosetta Script in the supplimentary meterials is old because when I try to use it I get a lot of typo errors, anyway I changed it but I could not find a way to fix this error:
Hi,
I have two domains that are asymmetric and I want to dock them using topology broker (asymmetric fold and dock like operation). Below is the full description of my problem:
1. I have pdbs for two domains that I want to dock. Domain1 has 3 chains and domain2 and 1 chain
Hello. I have a questions about abinitio structure prediction.
How to chang the DSSP code and let β-bridge become L , when get a pose secondary structure. I try to change it, but I do not know how to write the code in the dssp_state method of StrandPairing.cc in core/scoreing/dssp directory.
Please teach me method, if you know , thank you very much!
I was preparing the ligand params file for docking. When I used the following command to generate params files, I always get the "Too many arguments!" error.
~/rosetta*/main/source/scripts/python/public/molfile_to_params.py \ -n XX -p XXX --conformers-in-one-file XXX.sdf
How to fix this problem? Thank you in advance.
Dear All:
I have a mistake about rosetta.init() as 'AttributeError:'module' object has no attribute 'init''.
From rosetta import * ; from pyrosetta import * and pyrosetta.init() are all fine. My os is ubuntu 16.04. Pyrosetta is 'PyRosetta4.Release.python27.ubuntu.release-151.tar.bz2'.
Hi,
I have compiled Rosetta3.8 successfully with the command " $./scons.py bin mode=release extras=mpi cxx=icc". But when I performed the command "mpirun -np 64 AbinitioRelax.mpi.linuxiccrelease @options", the error will be displayed in the end like this:
=========================================================================
===
= BAD TERMINATION OF ONE OF YOUR APPLICATION PROCESSES
= PID XXXXX RUNING AT LOCALHOST.LOCALDOMAIN
= EXIT CODE:11
Hi All,
I am trying the tutorial of Comparative Modeling using Rosetta and I am not able to run this script (<path-to-Rosetta>/Rosetta/demos/tutotial/rosetta_cm/scripts/clean_pdb.py 2RH1_ISOLATED A). The "path-to-rosetta" in my Mac is "Applications" and also I have the latest python version. Does the scripting change with python versions as well?? Any help in this regard is greatly appreciated.
Thanks
Srinivasan Krishnan