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Error score_scatter_plot.py

Submitted by jrcf on Wed, 2015-12-30 05:46
Category: 
Structure prediction

Hi guys,

I'm using a tutorial for analysis my results of abinitio, in the step for "identify the best socring models" using this script  "~/rosetta_workshop/Rosetta/main/source/bin/combine_silent.default.linuxgccrelease -database ~/rosetta_workshop/Rosetta/main/database/ -in:file:silent 2LZM_0*.out -in:file:silent_struct_type binary -in:file:fullatom -out:output -out:file:silent 2LZM_all_models_silent.out -out:file:silent_struct_type binary -out:file:fullatom"

I has this error

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Rosetta 3 - General

Unit tests on a non-Intel CPU

Submitted by yuvals on Sun, 2015-12-27 07:03
Category: 
Compilation

Hello Rosetta forum!

I've been trying to run Rosetta (2015wk39) on an IBM Power8 machine. It has 64-bit PowerPC processors, which, according to our CS department, have been set up to work with little-endian byte ordering. Rosetta compiles fine* but I've been getting failures when running unit-tests.

I've attached the full log, and the epilogue is attached inline at the end of this message. Of all failed tests, I can only find details to the test_rotamer_trials test, which have the following error:

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Rosetta 3 - Build/Install

Getting an interface score from RosettaDock without docking

Submitted by rosend on Fri, 2015-12-18 14:02
Category: 
Docking

I'm interested in seeing how the energies output by RosettaDock relate to other docking software, so I want to try to take a set of dimer complex PDBs of which I know the score from the other software, and see what the scores would be if produced in RosettaDock.

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Rosetta 3 - General

Explanation of constraint functions?

Submitted by aloshbau on Mon, 2015-12-14 22:38
Category: 
Constraints

Hello,

Can someone explain or show me where to find information about the variables in the constraint function types? For example, in the harmonic function, what are the variables s and d? https://www.rosettacommons.org/docs/latest/rosetta_basics/file_types/constraint-file

Thanks!

Amanda

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Rosetta 3 - General

Rigid body perturbation while docking

Submitted by wajidarshad on Fri, 2015-12-11 02:14
Category: 
Docking

ERROR: NAN occurred in H-bonding calculations!
ERROR:: Exit from: core/scoring/hbonds/hbonds_geom.cc line: 1122
Traceback (most recent call last):
  File "docking.py", line 118, in <module>
    jobs, job_output)
  File "docking.py", line 79, in sample_docking
    perturb.apply(test_pose)    
RuntimeError: unidentifiable C++ exception

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PyRosetta - General

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