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Comparison between two fragment pickers

Submitted by qlj on Mon, 2013-09-02 06:34

Hi all,
I recently read a paper named "Generalized fragment picking in Rosetta: design, protocols and applications", and I ran the picker by Rosetta3.4.
In this paper, the method of comparison two fragment pickers is in terms of the results of ab-initio structure prediction benchmark. I think it is exceedingly difficult to make accurate, general statements. Did you go through some papers to directly evaluate fragment library by another objective methods. Do you have anything recommended, and I need your guidance and help.
Thank you!

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Rosetta 3 - General

Help with build on Fedora 19

Submitted by BhacSsylan on Sun, 2013-09-01 18:27

Hello there, I've been struggling with building Rosetta for about a week now and seem to have gotten myself good and stuck, so I was wondering if I could get some advice. I'm new to both Rosetta and Linux, which I'm sure is not helping. I just installed Fedora 19 after failing at using Cygwin, and I'm still getting lots of problems. I have SCons and gcc now (and subversion which I realize now I don't need but oh, well), but when I attempt to build Rosetta I still get a massive list of errors, almost all ending in

"sh: o: command not found"

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Rosetta 3 - Build/Install

Clustering and Protein Preparation for docking

Submitted by MRH on Sun, 2013-08-25 22:01

Hi everyone,
1)I have some doubts on clustering. I have modeled a protein and refined its loop. How exactly clustering will help me in further steps? and whats going to be the output result which i can use later? and do i need to use relax_a_large_protein option to the final model? (my protein contains 290 amino acid) or directly use the final model for docking studies?

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Rosetta 3 - General

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