Unsolved

I am going through the tutorial on how to add the NCAA's to Rosetta
on the example of ornithine. I managed to create the param file, and now
I am trying to create the rotamer library by using make_rot_lib application.

I noticed a strange behavior of the program for some values of phi and psi
angles. It works fine for the negative angles, but for some combinations of
positive angles I get errors. For instance for phi=40, psi=60, everything works fine,
but for phi=60, psi=40 I get a pdb file with two zeros in name instead of 60 and 40:

Hello,

I'd like to ask few questions related to ddg_monomer application:
1) When I set number of iterations to 50 (-ddg::iterations 50), the average energy in ddg_predictions.out file does not correspond to the arithmetic mean of the individual runs in the full output file. When I set number of iterations to 20 (other settings is the same) everything is OK.

Sorry for this simple question. How to prepare a combined PDB file with two different PDB files? Thanks.

hi
i am running a kinematic loop modeling/design run but it keeps on crashing with segementation fault error. could you tell me how to avaoid this? thanks.

command line:
%loopmodel.gccrelease -database XXX @loopmodelflags

flagfile:
-loops:input_pdb XXX.pdb
-loops:loop_file XXX.loop
-loops:remodel perturb_kic
-loops:refine refine_kic
-loops:relax fastrelax
-loops:extended
-in:file:fullatom
-loops:max_kic_build_attempts 10000
-out:file:fullatom
-out:overwrite
-out:prefix AAA
-out:path ./
-out:file:scorefile score.sc
-ex1
-ex2
-nstruct 10000
-resfile XXX.resfile