Unsolved

Hi everyone,
I am attempting to run a blind dock of a ligand (chain X) into a protein complex (chains ABCDEF). However, try as I might, I seem to always encounter problems. Currently, despite the fact that the flags I'm using should perturb the ligand by a significant amount, the resulting structures are virtually identical (for all chains) to the starting structure, except all chains have been rotated.
Here are my current command line flags:

-in:path:database /ifs/scratch/saxen/rosetta_database
-in:file:s struct_rpk_C2E.pdb

Hi guys.

We are trying to build PyRosetta from source on the same machine(s) we ran into errors with before.

( http://www.rosettacommons.org/content/problem-running-pyrosetta-redhatce... )

Instructions in /src/python/bindings were followed.
The compile works for a long time, and then fails. Both 3.2 and 3.3 were attempted. Both halt at different points and result in different errors. The beginning and end of the build log are attached:

Hi guys,
I'm getting a strange error during the build process when I try to compile the new 3.3 version. I haven't had problems on the same computer/setup with previous versions. The problem appears to be that scons is passing bad commandline options to gcc, specifically a '- s t d = c 9 9' string where the spaces are giving gcc hiccups. Any ideas? I tried correcting the gcc commandline, running separately, then going back to the scons commands again. It just has a problem on the next compilation instead. Scons output is below.

thanks!

-Louis

My platform is Ubuntu 10.04, and my python version is 2.5, all according to the requirement.
And the problem I get a screenshot.
Please help me .