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Hi.

I am a beginner with Rosetta, and was wondering if I can link its code (like any other library) to my program and use/call especial modules of it in my code. I can't decide it by reading the documentation on the website... Seems Rosetta isn't meant to be used in this way...

I'm specifically after the scoring functions (to calculate energies among atoms of a residue and also pairwise energies between each pair of residues). One option for me is to implement the terms of the energy function, and the other is using an existing library. Which one do you recommend?

Hi,

sorry if this question is too basic, but I'm trying to use FloppyTail to model the C-terminus of a structure (the starting model was generated with robetta) and the run allways crashed.

when I run the test available (complex_readytail_final_nozn.pdb) the program works fine!

I tried many things with the pdb file, but I allways have the same problem

the options are basically the same as the test, obviusly changing the -flexible_start_resnum

the log:

Warning: no movable positions in ShearMover!
apps.public.scenarios.FloppyTail: 96 -169.666 -169.666

Dear all,

I am doing homology modeling on a ~200 amino acid protein. According to the online manual, I plan to generate 10000 decoys. However, it would take very long time (about 20 days) to finish the job using a single processor on my machine. So I tried the " -run:constant_seed -run:jran " options which is suggested in Abinitio protocol. Then I submitted multiple jobs with different "jran" seeds.
Does this work? If not, please give some suggestions!

Thanks a lot!
-Justin

I'll be most thankful if some one can tell me how to insert a deprotonated LYS (LYN in AMBER) as if LYS is inserted into the PDB with only HZ1 and HZ2, Rosetta gives you a protonated (regular, adds the extra hydrogen) Lys at the end in the output design.

Thanks a lot

Arik