Unsolved

Is there an increase in NMR functionality in 3.2? Although I saw nothing in the 3.2 documentation to suggest this, the 3.2 version of "relax -help" and "score_jd2 -help" now suggests a wide array of NMR-related options (see attachment with partial output from "relax -help". So, are there really new NMR-related tools in 3.2? Are those documented somewhere?

Stéphane

Hi I tried installing rosetta 3.2 on windows using cygwin and I have installed zlib while installing cygwin but I am getting the following error :-

End of stack trace
12353592 [main] python 5504 fork: child 3364 - died waiting for dll loading, err
no 11
scons: *** [build/src/release/cygwin/1.7/32/x86/gcc/utility.dll] Resource tempor
arily unavailable
scons: building terminated because of errors.

What could have gone wrong ??
=======================================================================

I again tried using the same command and I got the following error :

Hi,

I would like to perform sequence design of the peptide bound to the protein. I am using PyRosetta and PackRotamersMover function. I would like to ask if it is possible to use BINDING ENERGY of peptide instead of TOTAL ENERGY of complex as a criterion for accepting/rejecting given mutation during Monte Carlo simulation?

Thanks!
Agnieszka

Hi, I'm currently an undergraduate research student in Singapore. My prof has just tasked me to try out Rosetta for docking. However, he is also new to the program, and so we are sort of stuck on how to start even a basic docking. We are using SUSE Linux. We hope that someone would be kind enough to get us started on a very basic tutorial on docking like the commands used, before we proceed on to explore the features further.

Thanks. =)