The problem hasn't been solved
Hi guys,
I tried to download the most recent release of Rosetta.
However, from what I checked on this website the last one is of September 2021
(Rosetta 2021.38 : https://www.rosettacommons.org/downloads/academic/2021/wk38/).
Is there more recent version?
I guess the weekly relases can be downloaded from somewhere else ?
hey,
Enclosed the final model and problem. I use the pyrosetta.rosetta.core.pose.rna to build RNA 3D strucutre. When I check the final results, I found that
the base part is not connected to backbone. I want to know how to solve this problem.
Best wishes,
Chenjie
Greetings,
I would like to dock a small protein on a metal surface. It may be similar simulations which has done by Jeff Gray's group. But I found the code in surface_docking was written for pyrosetta 2 based on python 2.x . I have tried to transform the script to python3.. However, unknown errors appeared all the time.
Can anyone tell me how to use these code in Pyrosetta4 (python3) or provide any detailed tutorial for surface_docking in Pyrosetta4?
Thanks very much!
Hao
Hello,
I want to get a series of enzyme-substrate binding pose in one step of my research, but I met some questions:
Hi,
I'm totally new to using Rosetta and TACC. when I tried to use rna_denovo.cxx11mpi.linuxiccrelease in TACC, it pops up an error:
" protocols.jd3.JobDistributorFactory: (0) [ ERROR ] JD3 cannot be used with MPI but without serialization; you must add "extras=mpi,serlization" to your ./scons.py build command "
I did some search on the forum and one suggested using another program with a different extension, but TACC only have "cxx11mpi.linuxiccrelease" version.
Thank you for your input.
Hello:
I've been trying to run the ligand docking, I want to ask hoe to specify the docking regin?
Thank you
Hi
I has been using RosettaRemodel -remodel:domainFusion:insert_segment_from_pdb for connecting pdb files such as connecting 1 helix pdb file and another 1 helix pdb file.
But it doesnt always work, is there another way to connecting two helices in different pdb file by loop?
Im wondering what protocols can be used for connecting two pdb files with loop to generate 1 pdb file
please help me
Thanks