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Downloading Rosetta weekly release

Category: 
Compilation

Hi guys,

I tried to download the most recent release of Rosetta.

However, from what I checked on this website the last one is of September 2021

(Rosetta 2021.38 : https://www.rosettacommons.org/downloads/academic/2021/wk38/).

Is there more recent version?

I guess the weekly relases can be downloaded from somewhere else ?

Post Situation: 

Rosettasurface in Pyrosetta 4

Category: 
Docking

Greetings,

    I would like to dock a small protein on a metal surface. It may be similar simulations which has done by Jeff Gray's group. But I found the code in surface_docking was written for pyrosetta 2 based on python 2.x . I have tried to transform the script to python3.. However, unknown errors appeared all the time.

    Can anyone tell me how to use these code in Pyrosetta4 (python3) or provide any detailed tutorial for surface_docking in Pyrosetta4? 

Thanks very much!

Hao

Post Situation: 

Error when using rna_denovo in TACC stampede2 HPC

Category: 
Compilation

Hi,

I'm totally new to using Rosetta and TACC. when I tried to use rna_denovo.cxx11mpi.linuxiccrelease in TACC, it pops up an error:

" protocols.jd3.JobDistributorFactory: (0) [ ERROR ] JD3 cannot be used with MPI but without serialization; you must add "extras=mpi,serlization" to your ./scons.py build command "

I did some search on the forum and one suggested using another program with a different extension, but TACC only have "cxx11mpi.linuxiccrelease" version.

Thank you for your input.

 

Post Situation: 

connecting pdb files

Category: 
Design

Hi

I has been using RosettaRemodel -remodel:domainFusion:insert_segment_from_pdb for connecting pdb files such as connecting 1 helix pdb file and another 1 helix pdb file.

But it doesnt always work, is there another way to connecting two helices in different pdb file by loop? 

Im wondering what protocols can be used for connecting two pdb files with loop to generate 1 pdb file 

please help me 

Thanks

 

Post Situation: 

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