The problem hasn't been solved
Hi,
is there a way for DARC to output not just the best energetic docking position but a number of suboptimal positions?
Thank you
Hello, I would like to ask for some help, regarding the article Kemp elimination catalysts by computational enzyme design, you would still have the transition state calculated by gauss, I need the output because I am trying to replicate the article, and I need the coordinates of the hydrogen being removed from the carbon in the transition state. Does anyone have these outputs?
Att. Thank you
Dear Rosetta Users,
I would like to build a linker that connects the VH to the VL domain of a single-chain Fv.
The length of the linker is ~15 aa (actually I'm going to build two linkers which differs in term of length).
In the literature, I found a case in which the RosettaRemodel application was used to perform a loop closure with a glycine-serine linker between two domains.
However, the sequence of my linker is known and it must not be changed.
I just need to build -and not design- the linker.
Hello
I am trying to model a 514-nt long RNA structure using farfar2. My job failed with the following error
ERROR: Not complementary at positions A 8 and U 13
I do not understand this, A and U are complementary and I have checked both the input sequence and dot bracket files and I dont see any discrepancies. Attaching both inputs and the Rosie crash log file. Could someone please help me sort the error.
Thank you
Hi,
Just a clarification about RoseTTaFold (https://github.com/RosettaCommons/RoseTTAFold):
Does it need pyRosetta in order to work properly?
I'm asking it becuase there are 2 diff. software licenses .
Thanks
Oz
This may be a really dumb question, but I am struggling to make sense of some data —so any input is welcome.
I am getting the following error while trying to assemble a 514-nucleotide long RNA using the "Stepwise" programme:
"one of your input pdbs -- native, alignment, or starting -- has a residue that is not found in the fasta!"
I have thoroughly checked my target fasta sequence and the input PDB containing part of the RNA structure. There are no residue mismatches...then why am I getting this error?
Hi everyone,
I apologize in advance if I am missing out on any critical detail that is relevant for troubleshooting this, but i'm completely new to trRosetta so please bear with me.
Currently, I am trying to run it with an MSA in order to construct an ab initio model for a target protein but I keep running into the following error
----------
core.scoring.hbonds.hbonds_geom: [ ERROR ] NAN occurred in H-bonding calculations!
Hello,
I have a raspberry pi 4B. I was trying to build Rosetta using Scon and it returned the following error:
`KeyError: "Processor 'aarch64' with machine designation 'aarch64' is unsupported."`
I would like to make sure if rosetta is truely incompatible with the raspberry pi processor. If yes, why BOINC rosetta@home is able to run tasks on the same device?
I must note that I changed the kernel to 64-bit and I tried to use raspbian-nspawn-64 that provide the ability to run 64-bit software on 32-bit os.