The problem hasn't been solved
Hi
I'm now trying to set timout option in my rosetta MPI run
which means that after certain period of time, whole process are automatically stopped
I run with following commands
mpirun -np 10 rosetta_scripts.mpi.linuxgccrelease @options
where options is
Hello, Rosetta team
I performed global docking for two proteins and got the output.sc file, there are different "RMS"s reported, Irms, Irms_leg, cen_rms, rms, and st_rmsd, what values are more useful for analysis? I wonder if term "rms" is calcualted based on what? since I started with two far away proteins for global docking, I wonder if this rms is calcualted based on the intinial structure?
I did not provide native structure for global docking.
Your GitHub account does not have verified academic email address! Please visit https://github.com/settings/emails and setup it! If your institution _is academic_ please contact our support forum at [https://www.rosettacommons.org/forums/rosie/rosie-general] and provide your institution name and domain address.
I have an institutional email address: jixin@jsph.org.cn. I am a doctor at Nanjing Medical University first affliated Hospital, Nanjing, China, and I want to use the server for academic purpose only.
I have a ligand with which I am trying to design a pocket in a synthetic protein.
Now the ligand doesn't have any rotatble bonds, because it's carbon chain is full of conjugated bonds,
However it keeps isomerizing some of the bonds,
is there any way I could completly fix the carbon chain?
Hello,
I am attempting to install a modern version of the RosettaAntibody protocol, and I’m encountering errors with the Linux binary of the protocol provided for commercial download (antibody.static.linuxgccrelease). For reference, I am using the latest available weekly release: 2023.45 from November 2023.
While other protocols from this binary distribution are working correctly in our hands, the RosettaAntibody is failing with the below compiler version error:
hello gus,
When i use catesian-ddg for protein stability, i want saturation site by all amino acied. but I Set "1 A ALLAA" OR "C 1 ALLAA"(first site is cys), all error.
and i type "total 9
1
C 1 A
1
C 1 W
1
C 1 F
1
C 1 I
..... " Enumerative method is OK. So， how I set mutfile more easy and clearly ? help!
I have an institutional email address: asrivastava@erauniversity.in. I am a PhD student at Era's Lucknow Medical College & Hospital, Era University, Lucknow, Uttar Pradesh, India and I want to use the server for academic purpose only.
Hi,
Could you please verify my academic email address?
My university: Tehran University of Medical Sciences (https://en.tums.ac.ir)
Email domains of my university: @student.tums.ac.ir ; @alumnus.tums.ac.ir
Yours gratefully,
Arash Sadri