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Gray

Institute: 
John Hopkins University
Machine name: 
gray
PI NCBI name: 
Gray JJ
PI email: 
jgray@jhu.edu

CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Daily, M. D., Masica, D., Sivasubramanian, A., Somarouthu, S. and Gray, J. J.
Volume: 
60
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
181-186
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Structural model of the mAb 806-EGFR complex using computational docking followed by computational and experimental mutagenesis

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Sivasubramanian, A., Chao, G., Pressler, H. M., Wittrup, K. D. and Gray, J. J.
Volume: 
14
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Structure
Pages: 
401-414
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Incorporating biochemical information and backbone flexibility in RosettaDock for CAPRI rounds 6-12

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Chaudhury, S., Sircar, A., Sivasubramanian, A., Berrondo, M. and Gray, J. J.
Volume: 
69
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
Proteins
Pages: 
793-800
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Structure prediction of protein-solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Makrodimitris, K., Masica, D. L., Kim, E. T. and Gray, J. J.
Volume: 
129
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2007
Reference: 
J Am Chem Soc
Pages: 
13713-13722
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Structure prediction of domain insertion proteins from structures of individual domains

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Berrondo, M., Ostermeier, M. and Gray, J. J.
Volume: 
16
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
Structure
Pages: 
513-527
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Chaudhury, S. and Gray, J. J.
Volume: 
381
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
J Mol Biol
Pages: 
1068-1087
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Modeling the structure of mAb 14B7 bound to the anthrax protective antigen

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Sivasubramanian, A., Maynard, J. A. and Gray, J. J.
Volume: 
70
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2008
Reference: 
Proteins
Pages: 
218-230
Lab: 
Gray
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

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