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Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors

Submitted by admin on Thu, 2011-05-19 12:36

Authors:

Raveh B, London N, Zimmerman L, Schueler-Furman O

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21572516

Year:

2011

Reference:

PLoS One

Lab:

Furman

Publication Type:

Application

Publication Subject:

Protein Docking

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BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement

Submitted by admin on Thu, 2011-05-19 12:31

Authors:

Woetzel N, Lindert S, Stewart PL, Meiler J

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21565271

Year:

2011

Reference:

J Struct Biol

Publication Type:

Application

Publication Subject:

Applications

Lab:

Meiler

Read more about BCL::EM-Fit: Rigid body fitting of atomic structures into density maps using geometric hashing and real space refinement

Computational design of proteins targeting the conserved stem region of influenza hemagglutinin

Submitted by admin on Thu, 2011-05-19 12:29

Authors:

Fleishman SJ, Whitehead TA, Ekiert DC, Dreyfus C, Corn JE, Strauch EM, Wilson IA, Baker D

Volume:

332

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21566186

Year:

2011

Reference:

Science

Pages:

816-21

Lab:

Baker

Publication Type:

Application

Publication Subject:

Protein Design

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HiTRACE: High-throughput robust analysis for capillary electrophoresis

Submitted by admin on Thu, 2011-05-19 12:26

Authors:

Yoon S, Kim J, Hum J, Kim H, Park S, Kladwang W, Das R

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21561922

Year:

2011

Reference:

Bioinformatics

Publication Type:

Application

Publication Subject:

Applications

Lab:

Das

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Analysis and Modeling of the Variable Region of Camelid Single-Domain Antibodies

Submitted by admin on Sun, 2011-05-01 10:15

Authors:

Sircar A, Sanni KA, Shi J, Gray JJ

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21525384

Year:

2011

Reference:

J Immunol

Publication Type:

Application

Publication Subject:

Applications

Lab:

Gray

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Structure-guided forcefield optimization

Submitted by admin on Sun, 2011-04-17 04:09

Authors:

Song Y, Tyka M, Leaver-Fay A, Thompson J, Baker D

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21488100

Year:

2011

Reference:

Proteins

Publication Type:

Application

Publication Subject:

Applications

Lab:

Baker

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Membrane Protein Structure Determination using Paramagnetic Tags

Submitted by erankuch on Thu, 2011-04-14 00:33

Authors:

Ganguly S, Weiner BE, Meiler J

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21481766

Year:

2011

Reference:

Structure

Pages:

441-3

Lab:

Meiler

Publication Type:

Application

Publication Subject:

Applications

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Large-scale characterization of peptide-MHC binding landscapes with structural simulations

Submitted by erankuch on Thu, 2011-04-14 00:14

Authors:

Yanover C, Bradley P

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21478437

Year:

2011

Reference:

Proc Natl Acad Sci U S A

Publication Type:

Application

Publication Subject:

Applications

Lab:

Bradley

Read more about Large-scale characterization of peptide-MHC binding landscapes with structural simulations

Essential role for ubiquitin-ubiquitin-conjugating enzyme interaction in ubiquitin discharge from cdc34 to substrate

Submitted by erankuch on Thu, 2011-04-14 00:12

Authors:

Saha A, Lewis S, Kleiger G, Kuhlman B, Deshaies RJ

Volume:

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21474069

Year:

2011

Reference:

Mol Cell

Pages:

75-83

Lab:

Kuhlman

Publication Type:

Application

Publication Subject:

Applications

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Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings

Submitted by admin on Sat, 2011-04-09 09:58

Authors:

Sgourakis NG, Lange OF, Dimaio F, André I, Fitzkee NC, Rossi P, Montelione GT, Bax A, Baker D

Link to Article:

http://www.ncbi.nlm.nih.gov/pubmed/21466200

Year:

2011

Reference:

J Am Chem Soc

Publication Type:

Application

Publication Subject:

Modeling With Experimental Constraints

Lab:

Baker

Read more about Determination of the Structures of Symmetric Protein Oligomers from NMR Chemical Shifts and Residual Dipolar Couplings

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