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Other Rosetta Papers

Structural inference of native and partially folded RNA by high-throughput contact mapping

Authors: 
Das, R., Kudaravalli, M., Jonikas, M., Laederach, A., Fong, R., Schwans, J. P., Baker, D., Piccirilli, J. A., Altman, R. B. and Herschlag, D.
Volume: 
105
Link to Article: 
Year: 
2008
Reference: 
Proc Natl Acad Sci U S A
Pages: 
4144-4149
Publication Type: 
Publication Subject: 

Structural genomics of pathogenic protozoa: an overview

Authors: 
Fan, E., Baker, D., Fields, S., Gelb, M. H., Buckner, F. S., Van Voorhis, W. C., Phizicky, E., Dumont, M., Mehlin, C., Grayhack, E., Sullivan, M., Verlinde, C., Detitta, G., Meldrum, D. R., Merritt, E. A., Earnest, T., Soltis, M., Zucker, F., Myler, P. J., Schoenfeld, L., Kim, D., Worthey, L., Lacount, D., Vignali, M., Li, J., Mondal, S., Massey, A., Carroll, B., Gulde, S., Luft, J., Desoto, L., Holl, M., Caruthers, J., Bosch, J., Robien, M., Arakaki, T., Holmes, M., Le Trong, I. and Hol, W. G.
Volume: 
426
Link to Article: 
Year: 
2008
Reference: 
Methods Mol Biol
Pages: 
497-513
Publication Type: 
Publication Subject: 

The structure, dynamics, and energetics of protein adsorption-lessons learned from adsorption of statherin to hydroxyapatite

Authors: 
Goobes, G., Goobes, R., Shaw, W. J., Gibson, J. M., Long, J. R., Raghunathan, V., Schueler-Furman, O., Popham, J. M., Baker, D., Campbell, C. T., Stayton, P. S. and Drobny, G. P.
Volume: 
45
Link to Article: 
Year: 
2008
Reference: 
Magn Reson Chem
Pages: 
S32-S47
Publication Type: 
Publication Subject: 

De novo computational design of retro-aldol enzymes

Authors: 
Jiang, L., Althoff, E. A., Clemente, F. R., Doyle, L., Rothlisberger, D., Zanghellini, A., Gallaher, J. L., Betker, J. L., Tanaka, F., Barbas, C. F., 3rd, Hilvert, D., Houk, K. N., Stoddard, B. L. and Baker, D.
Volume: 
319
Link to Article: 
Year: 
2008
Reference: 
Science
Pages: 
1387-1391
Lab: 
Publication Type: 
Publication Subject: 

Ranking predicted protein structures with support vector regression

Authors: 
Qiu, J., Sheffler, W., Baker, D. and Noble, W. S.
Volume: 
71
Link to Article: 
Year: 
2008
Reference: 
Proteins
Pages: 
1175-1182
Publication Type: 
Publication Subject: 

Kemp elimination catalysts by computational enzyme design

Authors: 
Rothlisberger, D., Khersonsky, O., Wollacott, A. M., Jiang, L., DeChancie, J., Betker, J., Gallaher, J. L., Althoff, E. A., Zanghellini, A., Dym, O., Albeck, S., Houk, K. N., Tawfik, D. S. and Baker, D.
Volume: 
453
Link to Article: 
Year: 
2008
Reference: 
Nature
Pages: 
190-195
Lab: 
Publication Type: 
Publication Subject: 

Solvent accessible surface area approximations for rapid and accurate protein structure prediction

Authors: 
Durham, E., Dorr, B., Woetzel, N., Staritzbichler, R. and Meiler, J.
Volume: 
15
Link to Article: 
Year: 
2009
Reference: 
J Mol Model
Pages: 
1093-1108
Lab: 
Publication Type: 
Publication Subject: 

PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta

Authors: 
Chaudhury, S., Lyskov, S. and Gray, J. J.
Volume: 
26
Link to Article: 
Year: 
2010
Reference: 
Bioinformatics
Pages: 
689-691
Lab: 
Publication Type: 
Publication Subject: 

Designing ensembles in conformational and sequence space to characterize and engineer proteins

Authors: 
Friedland, G. D. and Kortemme, T.
Link to Article: 
Year: 
2010
Reference: 
Curr Opin Struct Biol
Publication Type: 
Publication Subject: 
Lab: 

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