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Rosetta 3 - Applications
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Enzyme Design Not Editing Structure by liuwenxi » Wed, 2022-05-18 10:12 |
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968 |
by liuwenxi Wed, 2022-05-18 10:12 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,671 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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962 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
7,897 |
by e3lm Thu, 2022-05-26 12:51 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
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950 |
by e3lm Thu, 2022-05-26 12:55 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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965 |
by seayoung lee Fri, 2022-05-27 02:45 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
1,602 |
by yliang20 Tue, 2022-06-07 08:36 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,759 |
by yliang20 Wed, 2022-06-15 13:46 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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3,459 |
by Payne Tue, 2022-06-21 07:25 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
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938 |
by almeida85 Thu, 2022-06-23 05:50 |
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SnugDock Partners parameter by tyang39 » Fri, 2022-07-08 10:02 |
1 |
1,125 |
by rmoretti Fri, 2022-07-08 10:27 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
824 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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Ligand Docking with ROSETTA by sc19 » Thu, 2022-07-14 01:32 |
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1,055 |
by sc19 Thu, 2022-07-14 01:34 |
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Error with RoseTTAFold by sc19 » Thu, 2022-07-14 03:40 |
0 |
1,107 |
by sc19 Thu, 2022-07-14 03:40 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
885 |
by zmfowler Thu, 2022-07-14 05:34 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
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1,209 |
by rmoretti Fri, 2022-07-15 13:50 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
1 |
1,100 |
by matteoferla Wed, 2022-07-20 10:50 |
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Benchmarking Rosetta DDG Methods by sareeves96 » Fri, 2022-07-29 09:55 |
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1,015 |
by sareeves96 Fri, 2022-07-29 09:55 |
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CS-Rosetta cofactor by martongadanecz » Wed, 2022-08-03 01:05 |
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894 |
by martongadanecz Wed, 2022-08-03 01:05 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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889 |
by Roberto Thu, 2022-08-04 07:11 |
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Include MHC alpha helices in loop modelling protocol for pMHC complex by Roberto » Thu, 2022-08-04 07:22 |
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903 |
by Roberto Thu, 2022-08-04 07:22 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
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1,525 |
by liuwenxi Fri, 2022-08-05 09:50 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
6 |
4,506 |
by chandana Tue, 2022-08-09 20:27 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
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1,330 |
by chandana Tue, 2022-08-09 20:36 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
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955 |
by eyaaaan Tue, 2022-08-09 21:59 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
1,933 |
by almeida85 Thu, 2022-08-11 00:58 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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2,027 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
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1,048 |
by GebauerJ Tue, 2022-08-16 07:44 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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1,056 |
by almeida85 Thu, 2022-08-18 07:53 |
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Trehalose by jpfuenzalidawx » Thu, 2022-09-08 00:49 |
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992 |
by jpfuenzalidawx Thu, 2022-09-08 00:49 |
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Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
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961 |
by almeida85 Thu, 2022-09-08 06:54 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
2,210 |
by erpannec Thu, 2022-09-15 05:17 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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1,266 |
by rmoretti Fri, 2022-09-23 09:38 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,452 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
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1,909 |
by rmoretti Tue, 2022-10-04 07:57 |
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Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
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1,767 |
by almeida85 Tue, 2022-10-25 02:32 |
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Ligand Rotamer Control in Macther by Hirbond » Tue, 2022-10-25 13:01 |
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1,841 |
by Hirbond Wed, 2022-10-26 12:57 |
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snugdock: constrained backbone by mahendra » Mon, 2022-11-14 02:51 |
0 |
1,866 |
by mahendra Mon, 2022-11-14 02:51 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
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1,606 |
by rtorquato Fri, 2022-11-25 12:05 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
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3,750 |
by nannemdp Mon, 2022-11-28 09:39 |
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The confussion about an example in tutorial in Rosetta Virtual Workshop 2020 by ldx022 » Tue, 2022-11-29 04:58 |
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4,585 |
by ldx022 Tue, 2022-11-29 08:38 |
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Unable to locate the "compute_ddg.py" file and running the RosettaMP protocol by Sajjad » Mon, 2022-11-28 14:09 |
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5,220 |
by Sajjad Wed, 2022-11-30 11:50 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
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4,034 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
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1,215 |
by stannowitz Tue, 2023-01-17 23:48 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
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1,044 |
by SubhaK Wed, 2023-01-18 23:33 |
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snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
5 |
2,919 |
by lei Fri, 2023-01-20 08:11 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
3 |
5,015 |
by Patrícia Antunes Fri, 2023-01-20 11:55 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
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1,319 |
by xfradera Fri, 2023-01-27 06:36 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,676 |
by rmoretti Mon, 2023-02-06 15:06 |
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Comparing a prediction to the native structure and calculate RMSD for RNA by danwolf_33 » Thu, 2023-02-09 09:32 |
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2,041 |
by danwolf_33 Thu, 2023-02-09 09:34 |
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How to change the axes of "-spin" in docking_protocol by Zehui Zhou » Mon, 2023-02-13 22:06 |
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2,271 |
by Zehui Zhou Mon, 2023-02-13 22:06 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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3,260 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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ligand_docking by yang » Thu, 2023-02-16 04:37 |
2 |
2,663 |
by yang Wed, 2023-02-22 19:18 |
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how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
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1,925 |
by xfradera Tue, 2023-02-28 10:13 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,999 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
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2,391 |
by katherinemccoy Mon, 2023-03-13 19:10 |
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core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by ldx022 » Thu, 2023-03-16 04:13 |
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1,234 |
by ldx022 Thu, 2023-03-16 04:13 |
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Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
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889 |
by mrinal Mon, 2023-03-20 15:58 |
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error in loop remodeling by syntekabio2019 » Wed, 2023-04-05 01:00 |
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548 |
by syntekabio2019 Wed, 2023-04-05 01:01 |
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XML validation failing by mb0261 » Fri, 2023-04-14 14:53 |
11 |
2,744 |
by mb0261 Mon, 2023-04-17 17:38 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
6 |
7,410 |
by Aben Tue, 2023-04-18 01:31 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
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4,333 |
by FJOM Wed, 2023-05-03 07:21 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
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645 |
by rmoretti Fri, 2023-05-05 13:44 |
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Docking one protein into interface between two other proteins by Cheems » Sat, 2023-05-06 09:49 |
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1,103 |
by rmoretti Mon, 2023-05-08 13:14 |
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Simple_cycpep_predict with crosslinker BBMB by Ken » Tue, 2023-05-09 08:52 |
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550 |
by Ken Tue, 2023-05-09 08:52 |
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Error with xml script by almeida85 » Tue, 2023-03-28 01:53 |
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676 |
by almeida85 Tue, 2023-05-16 01:00 |
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dG_separated values comparison by almeida85 » Mon, 2023-04-24 03:34 |
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637 |
by almeida85 Tue, 2023-05-16 01:02 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
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888 |
by almeida85 Tue, 2023-05-23 08:23 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
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517 |
by top-gun98 Wed, 2023-06-07 17:19 |
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Silent File Scores Missing: RNA Protein Complex Predition by axio23 » Fri, 2023-06-16 05:45 |
0 |
476 |
by axio23 Fri, 2023-06-16 05:45 |
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Generating a new Vall database by vijay.anand » Tue, 2023-06-20 12:08 |
0 |
490 |
by vijay.anand Tue, 2023-06-20 12:08 |
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cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
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728 |
by rmoretti Wed, 2023-06-28 12:36 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
6 |
1,858 |
by rmoretti Mon, 2023-07-10 08:57 |
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Memory Leak in FragmentPicker.cxx11thread application by Corvin » Tue, 2023-07-11 06:04 |
0 |
400 |
by Corvin Thu, 2023-07-13 05:30 |
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rosetta_cm - ERROR: Assertion `tlen < slen` failed on File: src/core/fragment/util.cc:177 by ramon-arg » Thu, 2023-07-13 18:41 |
2 |
755 |
by ramon-arg Fri, 2023-07-14 07:47 |
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fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
6 |
1,414 |
by yueyuedake Sun, 2023-07-16 19:17 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
1 |
558 |
by rmoretti Thu, 2023-07-20 10:08 |
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Antibody Structure Prediction - Error on antibody_H3 step: "Option matching -antibody:remodel not found in command line" by ramon-arg » Mon, 2023-07-24 17:56 |
0 |
393 |
by ramon-arg Mon, 2023-07-24 17:56 |
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RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
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572 |
by skorro Fri, 2023-07-28 12:20 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
2 |
3,280 |
by Jane_002 Thu, 2023-08-03 19:47 |
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Rosetta Design: Non-canonical amino acid substrate not accepted by Friedrich Ehinger » Fri, 2023-08-04 00:09 |
2 |
780 |
by Friedrich Ehinger Fri, 2023-08-04 08:38 |
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How do I compare the results of InterfaceAnalyzer using different trimers as input? by franz72 » Sun, 2023-08-06 10:10 |
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409 |
by franz72 Sun, 2023-08-06 10:10 |
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FixedBB design output no beta strands by tkoh » Fri, 2023-08-25 01:02 |
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556 |
by rmoretti Tue, 2023-08-29 20:13 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
2 |
771 |
by kameisel Wed, 2023-09-13 02:16 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
2 |
762 |
by lei Wed, 2023-09-13 19:35 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
2 |
1,582 |
by jxw Wed, 2023-10-11 10:04 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,968 |
by elpipasp Thu, 2023-10-19 04:37 |
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Are catalytic residues mutatable? by uka147 » Thu, 2023-10-26 03:49 |
3 |
837 |
by uka147 Mon, 2023-10-30 01:53 |
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Error with docking_prepack_protocol while executing the tutorial "Docking Flexible Proteins" by vitoralmeida1808 » Mon, 2023-11-06 09:43 |
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333 |
by vitoralmeida1808 Mon, 2023-11-06 09:43 |
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'Use_filters true' option - failure of AbInitio Relax application by Corvin » Wed, 2023-11-08 06:34 |
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292 |
by Corvin Wed, 2023-11-08 06:34 |
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Match: Outputs with 0 hits for cst and clashes with sidechains by uka147 » Wed, 2023-11-08 06:11 |
0 |
338 |
by uka147 Thu, 2023-11-09 01:36 |
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nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
2 |
512 |
by lei Wed, 2023-11-22 06:23 |
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Cannot install DAlphaBall by gerdos » Fri, 2023-10-13 07:55 |
1 |
798 |
by Seongsung Fri, 2023-11-24 04:52 |
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Error with SapScoreMetric (SimpleMetric sap_score not found in basic::datacache::DataMap) by Seongsung » Fri, 2023-11-24 05:09 |
0 |
329 |
by Seongsung Fri, 2023-11-24 13:14 |
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I want to refine my pdb file,but it has multiple breaks or has multiple loops missing resi by Edward » Sat, 2023-11-25 04:58 |
1 |
510 |
by Edward Sat, 2023-11-25 05:17 |
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analyze_flex_ddG.py by valebut » Tue, 2023-11-28 04:30 |
1 |
529 |
by Aleksandra Panfilova Tue, 2023-11-28 05:34 |
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Is Biopython required to run pdb_renumber.py? by ljjjxay » Wed, 2023-11-22 20:00 |
6 |
1,131 |
by ljjjxay Wed, 2023-12-06 19:24 |
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Broken structure of local docking of replicadock2 by Jun » Thu, 2023-12-28 00:26 |
0 |
371 |
by Jun Thu, 2023-12-28 00:26 |
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Error about rifdocking step 12 by ng98 » Mon, 2024-01-08 16:27 |
3 |
705 |
by ng98 Tue, 2024-01-09 23:42 |
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the results obtained after docking using RosettaDock and ZDOCK by aha » Thu, 2024-01-04 21:13 |
1 |
448 |
by rmoretti Thu, 2024-01-11 14:39 |