Hi all,
I'm trying to use simple_cycpep_predict with crosslinker BBMB, and the generated structure (see attached) does crosslink with BBMB. However, it also does a head-to-tail cyclization between the 2 termini and I would like to not have that happen. It's not clear to me from the help file how to do that as the default uses head-to-tail cyclization. Is there a way to turn that off?
Here is the sequence file, the parameters that I'm using, as well as one of the generated structures to illustrate what I am having issues with.
Thanks a bunch in advance.
Best,
Ken
| Attachment | Size |
|---|---|
 param file used when calling simple_cycpep_predict | 621 bytes |
| sequence file | 43 bytes |
| an example structure of the output. Note the 2 termini are also connect whereas I want them not to be. | 33.67 KB |
Category:
Post Situation: