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Rosetta 3 - Applications
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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1,217 |
by mbakalar Fri, 2018-08-31 13:06 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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871 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
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1,079 |
by LanMei Wed, 2020-10-07 09:58 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,499 |
by aaj Fri, 2016-02-26 08:40 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
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889 |
by Roberto Thu, 2022-08-04 07:11 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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1,223 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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An error with score app by Genta » Tue, 2019-10-29 18:46 |
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8,691 |
by Genta Tue, 2019-10-29 18:46 |
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How do I compare the results of InterfaceAnalyzer using different trimers as input? by franz72 » Sun, 2023-08-06 10:10 |
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409 |
by franz72 Sun, 2023-08-06 10:10 |
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antibody.mpi.linuxgccrelease some antibodies failing to model by drewaight » Mon, 2020-11-02 17:07 |
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1,286 |
by drewaight Mon, 2020-11-02 17:07 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
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780 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Snugdock Error: The sequence position requested was greater than the number of residues by stannowitz » Tue, 2023-01-17 07:37 |
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1,215 |
by stannowitz Tue, 2023-01-17 23:48 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
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1,037 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,715 |
by alex Sun, 2017-02-19 08:12 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
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1,404 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Ab Initio folding with HEM ligand molecule by jseco » Fri, 2021-03-05 06:49 |
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841 |
by jseco Mon, 2021-03-08 03:40 |
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Dimeric interface redesign by kjs1728 » Mon, 2022-05-02 21:57 |
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919 |
by kjs1728 Mon, 2022-05-02 21:57 |
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Match: Outputs with 0 hits for cst and clashes with sidechains by uka147 » Wed, 2023-11-08 06:11 |
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338 |
by uka147 Thu, 2023-11-09 01:36 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
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903 |
by Soler Sun, 2021-11-21 22:20 |
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how to control alignment for energy_based_clustering by xfradera » Tue, 2023-02-28 10:13 |
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1,925 |
by xfradera Tue, 2023-02-28 10:13 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,943 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,688 |
by matteoferla Thu, 2020-07-02 07:27 |
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Problems met when do H3_modeling in the antibody design protocol by ng98 » Sun, 2024-05-12 18:40 |
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270 |
by rmoretti Thu, 2024-06-20 13:11 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
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4,676 |
by smlewis Mon, 2014-04-21 06:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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4,151 |
by rmoretti Mon, 2014-04-21 06:47 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,946 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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2,333 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,703 |
by smlewis Tue, 2019-09-24 12:43 |
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cluster docked pdbs by kwu030 » Wed, 2023-06-14 22:48 |
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727 |
by rmoretti Wed, 2023-06-28 12:36 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,597 |
by smlewis Fri, 2018-07-27 13:32 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,532 |
by matteoferla Mon, 2020-05-04 01:43 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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2,368 |
by tevang Mon, 2014-04-21 06:47 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,940 |
by rmoretti Mon, 2014-04-21 06:48 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,964 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,571 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,482 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Inquiry about MPI-Rosetta: Issue with -nstruct Parameter by serena » Wed, 2024-01-24 00:59 |
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378 |
by rmoretti Wed, 2024-01-24 08:46 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
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2,995 |
by rmoretti Mon, 2014-04-21 06:47 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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4,639 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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1,142 |
by vmulligan Wed, 2021-04-28 12:59 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,575 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,990 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,810 |
by kamau Wed, 2017-12-13 14:31 |
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ERROR: ResidueType::add_ring: Requested atoms don't exist in this ResidueType! by walidabualafia » Thu, 2023-07-20 09:44 |
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557 |
by rmoretti Thu, 2023-07-20 10:08 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,435 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,511 |
by everyday847 Fri, 2019-08-23 04:08 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,871 |
by jeliazkov Mon, 2019-06-17 06:03 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,589 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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3,458 |
by Payne Tue, 2022-06-21 07:25 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
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2,949 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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2,390 |
by rmoretti Mon, 2015-05-25 12:30 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
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4,706 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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2,343 |
by rmoretti Sat, 2015-06-20 20:07 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
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2,353 |
by rmoretti Fri, 2016-10-14 08:56 |
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Model GFP chromophore(cro) using NCAA or NC backbone method? by lei » Thu, 2024-04-04 06:23 |
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225 |
by rmoretti Thu, 2024-06-20 13:12 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
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2,742 |
by smlewis Mon, 2014-04-21 06:47 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,400 |
by smlewis Mon, 2014-07-07 11:58 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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2,333 |
by rmoretti Fri, 2016-06-17 10:15 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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1,743 |
by rmoretti Mon, 2019-08-26 12:49 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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2,230 |
by rmoretti Wed, 2014-11-26 07:51 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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2,384 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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1,716 |
by rmoretti Wed, 2019-07-10 10:10 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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2,354 |
by lanselibai Fri, 2019-12-27 09:38 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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1,239 |
by smlewis Wed, 2021-03-24 14:59 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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1,217 |
by rmoretti Tue, 2022-05-17 07:29 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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2,591 |
by rmoretti Tue, 2015-07-14 14:59 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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1,679 |
by rmoretti Fri, 2019-03-29 13:21 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,565 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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1,318 |
by matteoferla Mon, 2020-05-04 02:02 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
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1,265 |
by rmoretti Fri, 2022-09-23 09:38 |
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Abnormal output of ScoreCutoffFilter by DivingWhale » Thu, 2024-05-30 18:46 |
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183 |
by rmoretti Thu, 2024-06-20 11:45 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
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3,555 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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3,076 |
by rmoretti Mon, 2014-08-04 14:51 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
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2,129 |
by rmoretti Fri, 2015-01-02 11:06 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,834 |
by benhardy Wed, 2020-09-30 04:24 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,981 |
by rmoretti Fri, 2019-04-26 12:13 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,489 |
by jadolfbr Tue, 2020-01-28 09:13 |
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the results obtained after docking using RosettaDock and ZDOCK by aha » Thu, 2024-01-04 21:13 |
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447 |
by rmoretti Thu, 2024-01-11 14:39 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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3,225 |
by rmoretti Tue, 2016-01-05 08:35 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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2,331 |
by rmoretti Wed, 2019-07-10 09:22 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,581 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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3,323 |
by rmoretti Mon, 2014-04-21 06:48 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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1,260 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
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2,266 |
by rmoretti Thu, 2016-06-23 10:55 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,973 |
by smlewis Thu, 2017-06-22 13:31 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,744 |
by rmoretti Fri, 2018-08-24 11:28 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
3,236 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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3,018 |
by rmoretti Mon, 2015-01-26 12:15 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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2,270 |
by rmoretti Wed, 2016-02-24 14:39 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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2,239 |
by rmoretti Thu, 2017-04-27 07:10 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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1,700 |
by rmoretti Fri, 2018-05-18 12:28 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,545 |
by rmoretti Mon, 2019-06-24 14:42 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
1 |
1,115 |
by rmoretti Thu, 2021-04-29 10:44 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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2,480 |
by jadolfbr Wed, 2015-09-09 12:35 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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1,586 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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2,482 |
by gsuchunli Mon, 2016-07-25 13:56 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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2,080 |
by rmoretti Thu, 2017-08-03 09:29 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
1,265 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
1 |
3,191 |
by dgront Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
2,189 |
by Pernille Fri, 2014-06-20 00:17 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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1,422 |
by rmoretti Mon, 2020-09-14 06:36 |