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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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7,999 |
by rmoretti Thu, 2024-06-20 11:14 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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723 |
by lsong2 Thu, 2021-11-18 10:31 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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947 |
by matteoferla Wed, 2020-07-22 03:08 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,360 |
by matteoferla Fri, 2020-04-10 02:40 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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946 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
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409 |
by JasonIsaac Sat, 2023-06-17 00:20 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,446 |
by fmerino Mon, 2017-10-16 04:02 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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749 |
by hanzhiz Thu, 2021-12-16 09:32 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,602 |
by ctaylor Mon, 2014-04-21 06:47 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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1,073 |
by pmit Thu, 2018-05-03 01:48 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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961 |
by nferruz Fri, 2020-08-28 06:05 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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649 |
by almeida85 Mon, 2022-09-19 07:22 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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1,675 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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1,019 |
by ate Sat, 2021-05-01 02:52 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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1,177 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
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495 |
by Brian Wiley Sun, 2023-02-12 20:46 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,552 |
by sayan500 Tue, 2019-07-30 22:20 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,816 |
by exchhattu Mon, 2014-04-21 06:47 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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543 |
by mrosam Mon, 2022-08-08 01:37 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
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1,916 |
by jurkm Mon, 2014-04-21 06:47 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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590 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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1,095 |
by rohi Thu, 2020-10-15 10:28 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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660 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,608 |
by tevang Mon, 2014-04-21 06:47 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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1,098 |
by LTJ Mon, 2020-07-06 14:13 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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795 |
by ate Wed, 2021-06-16 19:19 |
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Cartesian_ddG mutfile error by paulbo » Mon, 2024-02-05 01:25 |
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452 |
by paulbo Mon, 2024-02-05 01:25 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,774 |
by DanielK Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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1,058 |
by matteoferla Sun, 2020-03-22 05:29 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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1,007 |
by YuFei Wed, 2020-04-22 17:27 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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1,401 |
by jackzzs Mon, 2023-05-15 03:17 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
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1,539 |
by tricia Mon, 2014-04-21 06:47 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
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1,553 |
by exchhattu Mon, 2014-04-21 06:47 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
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1,677 |
by sdh Mon, 2014-04-21 06:47 |
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Hamiltonian Exchange by JSK » Mon, 2024-03-18 12:44 |
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228 |
by JSK Tue, 2024-03-19 09:21 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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982 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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[ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection! by Jane_002 » Tue, 2023-08-08 21:07 |
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637 |
by Jane_002 Tue, 2023-08-08 21:07 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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1,240 |
by fgomes Fri, 2019-11-22 19:12 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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855 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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611 |
by biotech Wed, 2022-10-26 11:17 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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965 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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905 |
by Corvin Wed, 2021-05-19 07:54 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,838 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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1,196 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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1,281 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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950 |
by rvandamme Mon, 2021-02-01 13:39 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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520 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,539 |
by albumns Mon, 2014-04-21 06:47 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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612 |
by SebastianBB Mon, 2022-11-21 08:33 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,661 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,764 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,652 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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925 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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588 |
by liuwenxi Tue, 2022-08-09 08:33 |
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FARFAR2 error: [ERROR: Not complementary at positions] by Eden » Sat, 2023-11-18 02:39 |
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301 |
by Eden Sat, 2023-11-18 02:39 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,836 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,385 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,498 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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951 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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877 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,805 |
by w107kdk Mon, 2014-04-21 06:47 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
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1,859 |
by anirbanzz Mon, 2014-04-21 06:47 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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1,154 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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1,164 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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604 |
by ialvy Tue, 2022-08-30 00:00 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,625 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,364 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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1,290 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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552 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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467 |
by almeida85 Thu, 2023-05-25 06:18 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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716 |
by hanzhiz Thu, 2021-12-16 09:18 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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1,155 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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568 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,912 |
by joseph Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
2,142 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
934 |
by ate Sat, 2021-05-01 02:22 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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577 |
by mb0261 Thu, 2022-06-30 10:48 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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611 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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1,054 |
by haom Wed, 2020-09-09 09:19 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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604 |
by He Xiao Mon, 2022-11-07 04:10 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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2,129 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
0 |
2,055 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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816 |
by dkesar Fri, 2021-06-04 19:09 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
4,284 |
by xujc Mon, 2014-04-21 06:47 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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738 |
by Wenithor Sat, 2021-10-09 07:23 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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636 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,618 |
by justin Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,595 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
779 |
by Antonia Wed, 2021-06-16 12:30 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
0 |
641 |
by csvajda Sat, 2022-08-13 08:08 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,508 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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872 |
by whiteqiu Mon, 2021-03-01 18:32 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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699 |
by rlwoltz Fri, 2022-04-29 15:15 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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432 |
by chenna Sun, 2023-04-23 23:52 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
0 |
1,696 |
by abhishek Mon, 2014-04-21 06:47 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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990 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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961 |
by Sunidhi Sun, 2020-11-01 11:01 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
0 |
812 |
by Soler Sat, 2021-11-20 23:41 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,460 |
by jferrie Mon, 2018-04-23 15:25 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
0 |
799 |
by rohi Fri, 2021-06-25 10:29 |