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Hello!

I am trying to use the packstat application for measuring the quality of my model. But, I'm not sure what the terms in output mean? (there is no info in user guide/documentation). I came up with the flags I've used from the RosettaHoles2 paper. As per the paper, it should output some pdb and also output explicit representation of voids. But, I donot see any output files. I only get the commandline output with three score columns.

Could someone clarify?

Hello everyone!

 I recently upgraded to CentOS7. So, I had to do a fresh installation of Rosetta. I am trying to build the latest version of rosetta with this command:-

$ sudo ./scons.py -j10 bin mode=release extras=static

The building terminates with an error like this:-

I think the same type of error is popping up while trying to compile different applications. Could someone help me with this?

Hi There,

I am trying to model a protein with disordered regions and found a paper that mentioned using -replonly_residues will be helpful in such case. I have run the simulation and when I checked the output structures , all of the replonly residues are mapped as 'GLY'. Is there a way to re-map them to the original sequence in the PDB coordinate file?

Thanks,

Subha

Dear all,

I am learning the advanced "protein-protein docking" part of the Rosetta about the docking of HA and antibody. When I input the following command in this tutorial: 

$ROSETTA_TOOLS/protein_tools/scripts/pdb_renumber.py --norestart input_files/3GBM_AB.pdb input_files/3gbm_HA.pdb

I get the following error message: