The problem hasn't been solved
Hey there,
I'm having trouble getting erraser to run. The following command:
erraser.py -pdb model_real_space_refined.pdb -map ../maps/FFT_13/70S_converted_1.ccp4 -map_reso 3.73
Give the errors as seen in the attached output.txt.
Everything compiled fine, using gcc5.4
any help would be appreciated.
cheers
matt B
I am using RosettaScripts to dock a ligand, and I would like to include several - known - key water interactions.
I found a demo somewhere (RosettaCon?) that showed this is possible, but I it looked like the xml was designed for a version well before Rosetta 3.7. From reading the Scripts docs, it looks like including the term minimize_water=true to the <MOVEMAP_BUILDER /> element should handle the water interactions.
Hello,
I am having an error while compiling Rosetta with GPU options. I am using the following command to build Rosetta 3.8 with opencl GPU options:
scons mode=release extras=opencl bin
The log produced during the building of executables is as follows:
Hi guys,
I would like to alter the activity of an enzyme towards a novel substrate.
Hi guys, I need a little help.
I run a docking, and I had a great result.
So, I repeat, but change the initial position of one of the proteis.
When I run, this error is showed.
I am trying to run a ligand docking simulation, and am running into a few technical limitations. I am trying to follow the tutorial form the Meiler lab (only with a different starting pdb and ligand).
I am running the command:
rosetta_scripts.linuxgccrelease -database $ROSETTA_DATABASE -in:file:s /inputs/4XXX_model.pdb /inputs/MyLigand.pdb -in:file:extra_res_fa /inputs/MyLigand.params -nstruct 3 -parser:protocol /scripts/xml/dock.xml -mistakes:restore_pre_talaris_2013_behavior true
Hi,
I am trying to model the C-terminal tail for a membrane protein which is not resolved in the crystal structure and run MD afterwards. It's 40 residues long, but disordered. I am choosing FloppyTail protocol. Since the protein is sitting in a membrane, Z component of all residues' coordinates should be more than a specific value, such that tail be out of the membrane and fall into the cytoplasmic region completely.
Hi all,
I’m trying to do a homology model using multiple templates taking as reference the RosettaCM tutorial (https://www.rosettacommons.org/demos/latest/tutorials/rosetta_cm/rosetta_cm_tutorial).
I have some doubts regarding the use of some weights for each of the stages.