The problem hasn't been solved
Can you help validate my email address to access ROSIE via Github. Could you please help me with the verification?
My institution is the Soochow University in China
my email is yuanxu0000@163.com
Thank you very much!
Flora
Dear all,
I am designing some peptides with the anchor_design approach. I am using the dG_separated values to compare them. For this, I included an InterfaceAnalyzer mover in my anchor_design xml script as follows:
Hello all,
I am keen on creating a custom Antibody design protocol for a problem.
how to generate _prepro.rama file for a customized beta-amino acid residues? I wish to generate a customized beta-amino acid residue for design applications.
Can you help validate my email address to access ROSIE via Github. Could you please help me with the verification?
My institution is the ALS Therapy Develpoment Institute, a non profit research institute in Boston, MA
my email is sperrin@als.net
Thank you very much!
Steve
I am currently working on a simple test with antibodies.
I have a question in this regard, can I use deepab instead of rosetta antibody to create antibody structures? When I looked at the snugdock paper, it seems that there is an additional protocol when using a tool other than rosetta antibody, but I know that deepab creates structures based on rosetta. So I am wondering if I can proceed in the same way as rosetta antibody when using deepab.
Hello everyone,
I ran into this problem when I compiled Rosetta-337 and my system is Ubuntu-20.04.1. The error is displayed as follows.
Hi I'm trying to fill the missing loop with remodel.linuxgccrelease in rosetta
for some pdb, there's no problem in filling missing loop
but I got following error with certain PDB
core.fragment.picking_old.vall.vall_io: Added 62471 sections to library totaling 1400124 residues.
core.fragment.picking_old.vall.eval.IdentityEval: ss = LLLLLLL | aa = .......
core.fragment.picking_old.vall.eval.ABEGOEval: abego = LLLLLLL
core.sequence.ABEGOManager: [ ERROR ] Unrecognized abego index: L
I have a 4 chain, 96 residues long PDB file. all four chains are identical, so I set up my rosettascript with the following indices to select each chain to mutate them.
<Index name="chain1" resnums="1-24"/>
<Index name="chain2" resnums="24-48"/>
<Index name="chain3" resnums="48-72"/>
<Index name="chain4" resnums="72-96"/>
However I get the follwoing error message when running this script: