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Baker

Institute: 
University of Washington
Machine name: 
baker
PI NCBI name: 
Baker D
PI email: 
dabaker@u.washington.edu

Computational redesign of endonuclease DNA binding and cleavage specificity

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Ashworth, J., Havranek, J. J., Duarte, C. M., Sussman, D., Monnat, R. J., Jr., Stoddard, B. L. and Baker, D.
Volume: 
441
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Nature
Pages: 
656-659
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bradley, P. and Baker, D.
Volume: 
65
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Proteins
Pages: 
922-929
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Homology modeling using parametric alignment ensemble generation with consensus and energy-based model selection

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Chivian, D. and Baker, D.
Volume: 
34
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Nucleic Acids Res
Pages: 
e112
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Dantas, G., Watters, A. L., Lunde, B. M., Eletr, Z. M., Isern, N. G., Roseman, T., Lipfert, J., Doniach, S., Tompa, M., Kuhlman, B., Stoddard, B. L., Varani, G. and Baker, D.
Volume: 
362
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
J Mol Biol
Pages: 
1004-1024
Lab: 
Baker
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Joachimiak, L. A., Kortemme, T., Stoddard, B. L. and Baker, D.
Volume: 
361
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
J Mol Biol
Pages: 
195-208
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Physically realistic homology models built with ROSETTA can be more accurate than their templates

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Misura, K. M., Chivian, D., Rohl, C. A., Kim, D. E. and Baker, D.
Volume: 
103
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2006
Reference: 
Proc Natl Acad Sci U S A
Pages: 
5361-5366
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

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