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Baker

Institute: 
University of Washington
Machine name: 
baker
PI NCBI name: 
Baker D
PI email: 
dabaker@u.washington.edu

Computational redesign of protein-protein interaction specificity

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kortemme, T., Joachimiak, L. A., Bullock, A. N., Schuler, A. D., Stoddard, B. L. and Baker, D.
Volume: 
11
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Nat Struct Mol Biol
Pages: 
371-379
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Exploring folding free energy landscapes using computational protein design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kuhlman, B. and Baker, D.
Volume: 
14
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Curr Opin Struct Biol
Pages: 
89-95
Lab: 
Baker
Publication Type: 
Review
Publication Subject: 
Other Rosetta Papers

Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kuhn, M., Meiler, J. and Baker, D.
Volume: 
54
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Proteins
Pages: 
282-288
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Misura, K. M., Morozov, A. V. and Baker, D.
Volume: 
342
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
J Mol Biol
Pages: 
651-664
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Morozov, A. V., Kortemme, T., Tsemekhman, K. and Baker, D.
Volume: 
101
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Proc Natl Acad Sci U S A
Pages: 
6946-6951
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Qian, B., Ortiz, A. R. and Baker, D.
Volume: 
101
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Proc Natl Acad Sci U S A
Pages: 
15346-15351
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Realistic protein-protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Schlosshauer, M. and Baker, D.
Volume: 
13
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Protein Sci
Pages: 
1660-1669
Lab: 
Baker
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

Free modeling with Rosetta in CASP6

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bradley, P., Malmstrom, L., Qian, B., Schonbrun, J., Chivian, D., Kim, D. E., Meiler, J., Misura, K. M. and Baker, D.
Volume: 
61 Suppl 7
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
128-134
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

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