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Baker

Institute: 
University of Washington
Machine name: 
baker
PI NCBI name: 
Baker D
PI email: 
dabaker@u.washington.edu

Improving the performance of Rosetta using multiple sequence alignment information and global measures of hydrophobic core formation

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bonneau, R., Strauss, C. E. and Baker, D.
Volume: 
43
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2001
Reference: 
Proteins
Pages: 
1-11
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Functional inferences from blind ab initio protein structure predictions

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bonneau, R., Tsai, J., Ruczinski, I. and Baker, D.
Volume: 
134
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2001
Reference: 
J Struct Biol
Pages: 
186-190
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Rosetta in CASP4: progress in ab initio protein structure prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bonneau, R., Tsai, J., Ruczinski, I., Chivian, D., Rohl, C., Strauss, C. E. and Baker, D.
Volume: 
Suppl 5
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2001
Reference: 
Proteins
Pages: 
119-126
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Conversion of monomeric protein L to an obligate dimer by computational protein design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kuhlman, B., O'Neill, J. W., Kim, D. E., Zhang, K. Y. and Baker, D.
Volume: 
98
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2001
Reference: 
Proc Natl Acad Sci U S A
Pages: 
10687-10691
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Simple physical models connect theory and experiment in protein folding kinetics

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Alm, E., Morozov, A. V., Kortemme, T. and Baker, D.
Volume: 
322
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2002
Reference: 
J Mol Biol
Pages: 
463-476
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

De novo prediction of three-dimensional structures for major protein families

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bonneau, R., Strauss, C. E., Rohl, C. A., Chivian, D., Bradley, P., Malmstrom, L., Robertson, T. and Baker, D.
Volume: 
322
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2002
Reference: 
J Mol Biol
Pages: 
65-78
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

A simple physical model for binding energy hot spots in protein-protein complexes

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kortemme, T. and Baker, D.
Volume: 
99
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2002
Reference: 
Proc Natl Acad Sci U S A
Pages: 
14116-14121
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Accurate computer-based design of a new backbone conformation in the second turn of protein L

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kuhlman, B., O'Neill, J. W., Kim, D. E., Zhang, K. Y. and Baker, D.
Volume: 
315
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2002
Reference: 
J Mol Biol
Pages: 
471-477
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Pages