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Baker

Institute: 
University of Washington
Machine name: 
baker
PI NCBI name: 
Baker D
PI email: 
dabaker@u.washington.edu

Computational design of epitope-scaffolds allows induction of antibodies specific for a poorly immunogenic HIV vaccine epitope

Submitted by admin on Sun, 2011-04-03 08:03
Authors: 
Correia BE, Ban YE, Holmes MA, Xu H, Ellingson K, Kraft Z, Carrico C, Boni E, Sather DN, Zenobia C, Burke KY, Bradley-Hewitt T, Bruhn-Johannsen JF, Kalyuzhniy O, Baker D, Strong RK, Stamatatos L, Schief WR
Volume: 
18
Link to Article: 
http://www.ncbi.nlm.nih.gov/pubmed/20826338
Year: 
2010
Reference: 
Structure
Pages: 
1116-26
Lab: 
Baker
Publication Type: 
Application
Publication Subject: 
Interface & Interface Design

Alternate states of proteins revealed by detailed energy landscape mapping

Submitted by admin on Sun, 2011-04-03 08:01
Authors: 
Tyka MD, Keedy DA, André I, Dimaio F, Song Y, Richardson DC, Richardson JS, Baker D
Volume: 
405
Link to Article: 
http://www.ncbi.nlm.nih.gov/pubmed/21073878
Year: 
2011
Reference: 
J Mol Biol
Pages: 
607-18
Lab: 
Baker
Publication Type: 
Application
Publication Subject: 
Applications

Comprehensive computational design of mCreI homing endonuclease cleavage specificity for genome engineering

Submitted by admin on Sun, 2011-04-03 07:59
Authors: 
Ulge UY, Baker DA, Monnat RJ Jr
Link to Article: 
http://www.ncbi.nlm.nih.gov/pubmed/21288879
Year: 
1999
Reference: 
Nucleic Acids Res
Lab: 
Baker
Publication Subject: 
Interface & Interface Design
Publication Type: 
Method

Role of conformational sampling in computing mutation-induced changes in protein structure and stability

Submitted by admin on Sun, 2011-04-03 07:56
Authors: 
Kellogg EH, Leaver-Fay A, Baker D
Volume: 
79
Link to Article: 
http://www.ncbi.nlm.nih.gov/pubmed/21287615
Year: 
2011
Reference: 
Proteins
Pages: 
830-8
Lab: 
Baker
Publication Type: 
Application
Publication Subject: 
Protein Design

Contrasting roles for symmetrically disposed beta-turns in the folding of a small protein

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Gu, H., Kim, D. and Baker, D.
Volume: 
274
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
1997
Reference: 
J Mol Biol
Pages: 
588-596
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Simons, K. T., Kooperberg, C., Huang, E. and Baker, D.
Volume: 
268
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
1997
Reference: 
J Mol Biol
Pages: 
209-225
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Prediction of local structure in proteins using a library of sequence-structure motifs

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bystroff, C. and Baker, D.
Volume: 
281
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
1998
Reference: 
J Mol Biol
Pages: 
565-577
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Pages