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Other Rosetta Papers

Exploring folding free energy landscapes using computational protein design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kuhlman, B. and Baker, D.
Volume: 
14
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Curr Opin Struct Biol
Pages: 
89-95
Lab: 
Baker
Publication Type: 
Review
Publication Subject: 
Other Rosetta Papers

Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kuhn, M., Meiler, J. and Baker, D.
Volume: 
54
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Proteins
Pages: 
282-288
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Analysis of anisotropic side-chain packing in proteins and application to high-resolution structure prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Misura, K. M., Morozov, A. V. and Baker, D.
Volume: 
342
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
J Mol Biol
Pages: 
651-664
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Morozov, A. V., Kortemme, T., Tsemekhman, K. and Baker, D.
Volume: 
101
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Proc Natl Acad Sci U S A
Pages: 
6946-6951
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Qian, B., Ortiz, A. R. and Baker, D.
Volume: 
101
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Proc Natl Acad Sci U S A
Pages: 
15346-15351
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Realistic protein-protein association rates from a simple diffusional model neglecting long-range interactions, free energy barriers, and landscape ruggedness

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Schlosshauer, M. and Baker, D.
Volume: 
13
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2004
Reference: 
Protein Sci
Pages: 
1660-1669
Lab: 
Baker
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

CASP6 assessment of contact prediction

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Grana, O., Baker, D., MacCallum, R. M., Meiler, J., Punta, M., Rost, B., Tress, M. L. and Valencia, A.
Volume: 
61 Suppl 7
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
214-224
Lab: 
Other Labs
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

E2 conjugating enzymes must disengage from their E1 enzymes before E3-dependent ubiquitin and ubiquitin-like transfer

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Eletr, Z. M., Huang, D. T., Duda, D. M., Schulman, B. A. and Kuhlman, B.
Volume: 
12
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Nat Struct Mol Biol
Pages: 
933-934
Lab: 
Kuhlman
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

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