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Other Rosetta Papers

Potential functions for hydrogen bonds in protein structure prediction and design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Morozov, A. V. and Kortemme, T.
Volume: 
72
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Adv Protein Chem
Pages: 
1-38
Lab: 
Kortemme
Publication Type: 
Review
Publication Subject: 
Other Rosetta Papers

CAPRI rounds 3-5 reveal promising successes and future challenges for RosettaDock

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Daily, M. D., Masica, D., Sivasubramanian, A., Somarouthu, S. and Gray, J. J.
Volume: 
60
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
181-186
Lab: 
Gray
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Applying linear interaction energy method for rational design of noncompetitive allosteric inhibitors of the sarco- and endoplasmic reticulum calcium-ATPase

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Singh, P., Mhaka, A. M., Christensen, S. B., Gray, J. J., Denmeade, S. R. and Isaacs, J. T.
Volume: 
48
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
J Med Chem
Pages: 
3005-3014
Lab: 
Other Labs
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

Free modeling with Rosetta in CASP6

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Bradley, P., Malmstrom, L., Qian, B., Schonbrun, J., Chivian, D., Kim, D. E., Meiler, J., Misura, K. M. and Baker, D.
Volume: 
61 Suppl 7
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
128-134
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Cheng, G., Qian, B., Samudrala, R. and Baker, D.
Volume: 
33
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Nucleic Acids Res
Pages: 
5861-5867
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Prediction of CASP6 structures using automated Robetta protocols

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Chivian, D., Kim, D. E., Malmstrom, L., Schonbrun, J., Rohl, C. A. and Baker, D.
Volume: 
61 Suppl 7
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
157-166
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

A "solvated rotamer" approach to modeling water-mediated hydrogen bonds at protein-protein interfaces

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Jiang, L., Kuhlman, B., Kortemme, T. and Baker, D.
Volume: 
58
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
893-904
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Kim, D. E., Chivian, D., Malmstrom, L. and Baker, D.
Volume: 
61 Suppl 7
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proteins
Pages: 
193-200
Lab: 
Baker
Publication Type: 
Method
Publication Subject: 
Other Rosetta Papers

A model of anthrax toxin lethal factor bound to protective antigen

Submitted by Anonymous on Fri, 2010-11-12 04:39
Authors: 
Lacy, D. B., Lin, H. C., Melnyk, R. A., Schueler-Furman, O., Reither, L., Cunningham, K., Baker, D. and Collier, R. J.
Volume: 
102
Link to Article: 
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Citati...
Year: 
2005
Reference: 
Proc Natl Acad Sci U S A
Pages: 
16409-16414
Lab: 
Other Labs
Publication Type: 
Application
Publication Subject: 
Other Rosetta Papers

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