Method

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Read more about Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

Protein-protein docking predictions for the CAPRI experiment

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Gray, J. J., Moughon, S. E., Kortemme, T., Schueler-Furman, O., Misura, K. M., Morozov, A. V. and Baker, D.

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Year:

2003

Reference:

Proteins

Pages:

118-122

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An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Kortemme, T., Morozov, A. V. and Baker, D.

Volume:

326

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Year:

2003

Reference:

J Mol Biol

Pages:

1239-1259

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Read more about An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes

Design of a novel globular protein fold with atomic-level accuracy

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Kuhlman, B., Dantas, G., Ireton, G. C., Varani, G., Stoddard, B. L. and Baker, D.

Volume:

302

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Year:

2003

Reference:

Science

Pages:

1364-1368

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Read more about Design of a novel globular protein fold with atomic-level accuracy

Rapid protein fold determination using unassigned NMR data

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Meiler, J. and Baker, D.

Volume:

100

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Year:

2003

Reference:

Proc Natl Acad Sci U S A

Pages:

15404-15409

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Coupled prediction of protein secondary and tertiary structure

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Meiler, J. and Baker, D.

Volume:

100

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Year:

2003

Reference:

Proc Natl Acad Sci U S A

Pages:

12105-12110

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Efficient minimization of angle-dependent potentials for polypeptides in internal coordinates

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Wedemeyer, W. J. and Baker, D.

Volume:

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Year:

2003

Reference:

Proteins

Pages:

262-272

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A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Chen, Y., Kortemme, T., Robertson, T., Baker, D. and Varani, G.

Volume:

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Year:

2004

Reference:

Nucleic Acids Res

Pages:

5147-5162

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Other Labs

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Read more about A new hydrogen-bonding potential for the design of protein-RNA interactions predicts specific contacts and discriminates decoys

A simple physical model for the prediction and design of protein-DNA interactions

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Havranek, J. J., Duarte, C. M. and Baker, D.

Volume:

344

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Year:

2004

Reference:

J Mol Biol

Pages:

59-70

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Read more about A simple physical model for the prediction and design of protein-DNA interactions

Protein structure prediction and analysis using the Robetta server

Submitted by Anonymous on Fri, 2010-11-12 04:39

Authors:

Kim, D. E., Chivian, D. and Baker, D.

Volume:

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Year:

2004

Reference:

Nucleic Acids Res

Pages:

W526-531

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